U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

pkd1l2 polycystin 1 like 2 (gene/pseudogene) [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100486136, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
pkd1l2provided by Xenbase
Official Full Name
polycystin 1 like 2 (gene/pseudogene)provided by Xenbase
Primary source
Xenbase:XB-GENE-968335
See related
Ensembl:ENSXETG00000032436 AllianceGenome:Xenbase:XB-GENE-968335
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable calcium ion binding activity and carbohydrate binding activity. Predicted to be located in membrane. Orthologous to human PKD1L2 (polycystin 1 like 2 (gene/pseudogene)). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See pkd1l2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
43
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (52652143..52712246)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (55158688..55216639)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene gigaxonin Neighboring gene beta-carotene oxygenase 1 Neighboring gene provisional ortholog of cryptochrome circadian regulator 1 Neighboring gene glycine cleavage system protein H (aminomethyl carrier)

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
polycystic kidney disease protein 1-like 2
Names
polycystic kidney disease 1-like 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    52652143..52712246
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031900773.1 → XP_031756633.1  polycystic kidney disease protein 1-like 2

    UniProtKB/TrEMBL
    A0A6I8PPD8
    Related
    ENSXETP00000061158.3, ENSXETT00000062163.3
    Conserved Domains (6) summary
    smart00034
    Location:22 → 147
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    cd01752
    Location:1385 → 1504
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    pfam02010
    Location:615 → 890
    REJ; REJ domain
    pfam01825
    Location:1276 → 1314
    GPS; GPCR proteolysis site, GPS, motif
    pfam02140
    Location:163 → 243
    Gal_Lectin; Galactose binding lectin domain
    pfam08016
    Location:1988 → 2408
    PKD_channel; Polycystin cation channel
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials