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SCN9A sodium voltage-gated channel alpha subunit 9 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100482886, updated on 3-Apr-2017

Summary

Gene symbol
SCN9A
Gene description
sodium voltage-gated channel alpha subunit 9
Locus tag
PANDA_018636
See related
Ensembl:ENSAMEG00000015522
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs

Genomic context

See SCN9A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
102 current AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218833.1 (16202..113592)

NW_003218833.1Genomic Context describing neighboring genes Neighboring gene sodium voltage-gated channel alpha subunit 1 Neighboring gene tetratricopeptide repeat domain 21B

Genomic regions, transcripts, and products

Genomic Sequence:
NW_003218833.1 Unplaced Scaffold Reference AilMel_1.0 Primary Assembly

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Taste transduction, organism-specific biosystem (from KEGG)
    Taste transduction, organism-specific biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...
  • Taste transduction, conserved biosystem (from KEGG)
    Taste transduction, conserved biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...

General protein information

Preferred Names
sodium channel protein type 9 subunit alpha
Names
sodium channel, voltage-gated, type IX, alpha subunit

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AilMel_1.0 Primary Assembly

Genomic

  1. NW_003218833.1 Reference AilMel_1.0 Primary Assembly

    Range
    16202..113592
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011236445.2XP_011234747.1  sodium channel protein type 9 subunit alpha isoform X1

    Related
    ENSAMEP00000016402.1, ENSAMET00000017081.1
    Conserved Domains (5) summary
    cd13433
    Location:14571509
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12251465
    Ion_trans; Ion transport protein
    pfam06512
    Location:9811186
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:487606
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17811836
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  2. XM_002928603.3XP_002928649.1  sodium channel protein type 9 subunit alpha isoform X2

    Conserved Domains (5) summary
    cd13433
    Location:14461498
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12141454
    Ion_trans; Ion transport protein
    pfam06512
    Location:9701175
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:487606
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17701825
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
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