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SCN5A sodium voltage-gated channel alpha subunit 5 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100459117, updated on 9-Oct-2018

Summary

Gene symbol
SCN5A
Gene description
sodium voltage-gated channel alpha subunit 5
Locus tag
CR201_G0006412
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs

Genomic context

See SCN5A in Genome Data Viewer
Location:
chromosome: 3
Exon count:
29
Annotation release Status Assembly Chr Location
103 current Susie_PABv2 (GCF_002880775.1) 3 NC_036906.1 (103286786..103389800)
102 previous assembly P_pygmaeus_2.0.2 (GCF_000001545.4) 3 NC_012594.1 (108048907..108153513)

Chromosome 3 - NC_036906.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene sodium voltage-gated channel alpha subunit 11 Neighboring gene sodium voltage-gated channel alpha subunit 10 Neighboring gene 60S ribosomal protein L18a pseudogene Neighboring gene exo/endonuclease G

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Adrenergic signaling in cardiomyocytes, organism-specific biosystem (from KEGG)
    Adrenergic signaling in cardiomyocytes, organism-specific biosystemCardiac myocytes express at least six subtypes of adrenergic receptor (AR) which include three subtypes of beta-AR (beta-1, beta-2, beta-3) and three subtypes of the alpha-1-AR (alpha-1A, alpha-1B, a...
  • Adrenergic signaling in cardiomyocytes, conserved biosystem (from KEGG)
    Adrenergic signaling in cardiomyocytes, conserved biosystemCardiac myocytes express at least six subtypes of adrenergic receptor (AR) which include three subtypes of beta-AR (beta-1, beta-2, beta-3) and three subtypes of the alpha-1-AR (alpha-1A, alpha-1B, a...

General gene information

Markers

Homology

General protein information

Preferred Names
sodium channel protein type 5 subunit alpha

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Pongo abelii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Susie_PABv2 Primary Assembly

Genomic

  1. NC_036906.1 Reference Susie_PABv2 Primary Assembly

    Range
    103286786..103389800
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024245232.1XP_024101000.1  sodium channel protein type 5 subunit alpha isoform X8

    Conserved Domains (5) summary
    cd13433
    Location:14691521
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12021477
    Ion_trans; Ion transport protein
    pfam06512
    Location:9531198
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:485654
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17521815
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  2. XM_024245230.1XP_024100998.1  sodium channel protein type 5 subunit alpha isoform X6

    Conserved Domains (5) summary
    cd13433
    Location:14511503
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12021459
    Ion_trans; Ion transport protein
    pfam06512
    Location:9531198
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:485654
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17661829
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  3. XM_024245234.1XP_024101002.1  sodium channel protein type 5 subunit alpha isoform X10

    Conserved Domains (5) summary
    cd13433
    Location:14161468
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11491424
    Ion_trans; Ion transport protein
    pfam06512
    Location:9531145
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:485654
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17311794
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  4. XM_024245226.1XP_024100994.1  sodium channel protein type 5 subunit alpha isoform X2

    Conserved Domains (5) summary
    cd13433
    Location:14701522
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12031478
    Ion_trans; Ion transport protein
    pfam06512
    Location:9531199
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:485654
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17851848
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  5. XM_024245229.1XP_024100997.1  sodium channel protein type 5 subunit alpha isoform X5

    Conserved Domains (5) summary
    cd13433
    Location:14521504
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12031460
    Ion_trans; Ion transport protein
    pfam06512
    Location:9531199
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:485654
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17671830
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  6. XM_024245225.1XP_024100993.1  sodium channel protein type 5 subunit alpha isoform X1

    Conserved Domains (5) summary
    cd13433
    Location:14701522
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12031478
    Ion_trans; Ion transport protein
    pfam06512
    Location:9531199
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:485654
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17851848
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  7. XM_024245227.1XP_024100995.1  sodium channel protein type 5 subunit alpha isoform X3

    Conserved Domains (5) summary
    cd13433
    Location:14691521
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12021477
    Ion_trans; Ion transport protein
    pfam06512
    Location:9531198
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:485654
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17841847
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  8. XM_024245231.1XP_024100999.1  sodium channel protein type 5 subunit alpha isoform X7

    Conserved Domains (5) summary
    cd13433
    Location:14701522
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12031478
    Ion_trans; Ion transport protein
    pfam06512
    Location:9531199
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:485654
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17531816
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  9. XM_024245228.1XP_024100996.1  sodium channel protein type 5 subunit alpha isoform X4

    Conserved Domains (5) summary
    cd13433
    Location:14701522
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:12031478
    Ion_trans; Ion transport protein
    pfam06512
    Location:9531199
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:485654
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17851848
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  10. XM_024245233.1XP_024101001.1  sodium channel protein type 5 subunit alpha isoform X9

    Conserved Domains (5) summary
    cd13433
    Location:14161468
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11491424
    Ion_trans; Ion transport protein
    pfam06512
    Location:9531145
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:485654
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17311794
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
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