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CDH7 cadherin 7 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100445659, updated on 26-Mar-2024

Summary

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Gene symbol
CDH7
Gene description
cadherin 7
Locus tag
CR201_G0013551
See related
Ensembl:ENSPPYG00000009226
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 17 NC_072002.2 (80694210..80836677)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 18 NC_072003.1 (60953408..61091862)

Chromosome 17 - NC_072002.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129051618 Neighboring gene uncharacterized LOC129051619 Neighboring gene uncharacterized LOC129051622 Neighboring gene cadherin 19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adherens junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion mediated by cadherin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072002.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    80694210..80836677
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054538056.2 → XP_054394031.1  cadherin-7

    UniProtKB/TrEMBL
    A0A2J8W3Q1, H2NWI9

  2. XM_024236001.3 → XP_024091769.1  cadherin-7

    UniProtKB/TrEMBL
    A0A2J8W3Q1, H2NWI9
    Conserved Domains (3) summary
    cd11304
    Location:157 → 258
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:73 → 151
    CA; Cadherin repeats
    pfam01049
    Location:631 → 779
    Cadherin_C; Cadherin cytoplasmic region
Nucleotide Protein
Heading Accession and Version

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