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PICALM phosphatidylinositol binding clathrin assembly protein [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100441846, updated on 3-Apr-2024

Summary

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Gene symbol
PICALM
Gene description
phosphatidylinositol binding clathrin assembly protein
Locus tag
CR201_G0045014
See related
Ensembl:ENSPPYG00000003744
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 9 NC_071994.2 (88144643..88256416, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 11 NC_071996.1 (84578682..84690472, complement)

Chromosome 9 - NC_071994.2Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 83 Neighboring gene adenosylhomocysteinase-like Neighboring gene tricarboxylate transport protein, mitochondrial-like Neighboring gene uncharacterized LOC129048946 Neighboring gene uncharacterized LOC129048945 Neighboring gene small nucleolar RNA U13 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables clathrin heavy chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in clathrin coat assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in clathrin-dependent endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle budding from presynaptic endocytic zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in clathrin-coated pit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in clathrin-coated vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of presynaptic endocytic zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol-binding clathrin assembly protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071994.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    88144643..88256416 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054526154.2 → XP_054382129.1  phosphatidylinositol-binding clathrin assembly protein isoform X17

  2. XM_054526162.1 → XP_054382137.1  phosphatidylinositol-binding clathrin assembly protein isoform X29

  3. XM_054526160.1 → XP_054382135.1  phosphatidylinositol-binding clathrin assembly protein isoform X26

  4. XM_054526161.1 → XP_054382136.1  phosphatidylinositol-binding clathrin assembly protein isoform X28

  5. XM_063728229.1 → XP_063584299.1  phosphatidylinositol-binding clathrin assembly protein isoform X27

  6. XM_054526159.1 → XP_054382134.1  phosphatidylinositol-binding clathrin assembly protein isoform X24

  7. XM_063728228.1 → XP_063584298.1  phosphatidylinositol-binding clathrin assembly protein isoform X25

  8. XM_054526157.1 → XP_054382132.1  phosphatidylinositol-binding clathrin assembly protein isoform X20

  9. XM_009246913.3 → XP_009245188.1  phosphatidylinositol-binding clathrin assembly protein isoform X22

    UniProtKB/TrEMBL
    A0A2J8S9L2, A0A8I5TGI1
    Related
    ENSPPYP00000034472.1
    Conserved Domains (2) summary
    pfam07651
    Location:19 → 282
    ANTH; ANTH domain
    pfam08287
    Location:265 → 344
    DASH_Spc19; Spc19

  10. XM_054526155.1 → XP_054382130.1  phosphatidylinositol-binding clathrin assembly protein isoform X18

  11. XM_009246914.3 → XP_009245189.1  phosphatidylinositol-binding clathrin assembly protein isoform X23

    UniProtKB/TrEMBL
    A0A2J8S9L2, A0A8I5U1V8
    Related
    ENSPPYP00000033248.1
    Conserved Domains (2) summary
    pfam07651
    Location:19 → 282
    ANTH; ANTH domain
    pfam08287
    Location:265 → 344
    DASH_Spc19; Spc19

  12. XM_054526156.1 → XP_054382131.1  phosphatidylinositol-binding clathrin assembly protein isoform X19

  13. XM_003777858.4 → XP_003777906.1  phosphatidylinositol-binding clathrin assembly protein isoform X21

    UniProtKB/TrEMBL
    A0A2J8S9L2, A0A2J8S9M0
    Conserved Domains (2) summary
    COG4223
    Location:268 → 366
    COG4223; Uncharacterized conserved protein [Function unknown]
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  14. XM_054526153.1 → XP_054382128.1  phosphatidylinositol-binding clathrin assembly protein isoform X16

  15. XM_009246911.3 → XP_009245186.1  phosphatidylinositol-binding clathrin assembly protein isoform X15

    UniProtKB/TrEMBL
    A0A2J8S9L2
    Conserved Domains (2) summary
    pfam07651
    Location:19 → 282
    ANTH; ANTH domain
    pfam08287
    Location:265 → 344
    DASH_Spc19; Spc19

  16. XM_054526151.1 → XP_054382126.1  phosphatidylinositol-binding clathrin assembly protein isoform X7

  17. XM_063728227.1 → XP_063584297.1  phosphatidylinositol-binding clathrin assembly protein isoform X12

  18. XM_003777859.4 → XP_003777907.1  phosphatidylinositol-binding clathrin assembly protein isoform X14

    UniProtKB/TrEMBL
    A0A2J8S9L0, A0A2J8S9L2
    Conserved Domains (2) summary
    COG4223
    Location:268 → 366
    COG4223; Uncharacterized conserved protein [Function unknown]
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  19. XM_054526150.1 → XP_054382125.1  phosphatidylinositol-binding clathrin assembly protein isoform X6

  20. XM_063728226.1 → XP_063584296.1  phosphatidylinositol-binding clathrin assembly protein isoform X10

  21. XM_054526146.1 → XP_054382121.1  phosphatidylinositol-binding clathrin assembly protein isoform X3

  22. XM_009246910.3 → XP_009245185.1  phosphatidylinositol-binding clathrin assembly protein isoform X13

    UniProtKB/TrEMBL
    A0A2J8S9L2
    Related
    ENSPPYP00000041890.1
    Conserved Domains (2) summary
    pfam07651
    Location:19 → 282
    ANTH; ANTH domain
    pfam08287
    Location:265 → 344
    DASH_Spc19; Spc19

  23. XM_054526149.1 → XP_054382124.1  phosphatidylinositol-binding clathrin assembly protein isoform X5

    UniProtKB/TrEMBL
    A0A8I5UW03

  24. XM_063728225.1 → XP_063584295.1  phosphatidylinositol-binding clathrin assembly protein isoform X9

  25. XM_054526145.1 → XP_054382120.1  phosphatidylinositol-binding clathrin assembly protein isoform X2

  26. XM_002822319.5 → XP_002822365.1  phosphatidylinositol-binding clathrin assembly protein isoform X11

    UniProtKB/TrEMBL
    A0A2J8S9L2, A0A2J8S9L8, H2NEV6
    Related
    ENSPPYP00000004281.3
    Conserved Domains (2) summary
    COG4223
    Location:268 → 366
    COG4223; Uncharacterized conserved protein [Function unknown]
    pfam07651
    Location:24 → 282
    ANTH; ANTH domain

  27. XM_054526147.1 → XP_054382122.1  phosphatidylinositol-binding clathrin assembly protein isoform X4

  28. XM_009246906.3 → XP_009245181.1  phosphatidylinositol-binding clathrin assembly protein isoform X8

    UniProtKB/TrEMBL
    A0A2J8S9L2
    Conserved Domains (2) summary
    pfam07651
    Location:19 → 282
    ANTH; ANTH domain
    pfam08287
    Location:265 → 344
    DASH_Spc19; Spc19

  29. XM_054526144.1 → XP_054382119.1  phosphatidylinositol-binding clathrin assembly protein isoform X1

  30. XM_063728230.1 → XP_063584300.1  phosphatidylinositol-binding clathrin assembly protein isoform X30

Nucleotide Protein
Heading Accession and Version

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