U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

COL4A2 collagen type IV alpha 2 chain [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 100429807, updated on 17-Aug-2024
Official Symbol
COL4A2provided by VGNC
Official Full Name
collagen type IV alpha 2 chainprovided by VGNC
Primary source
VGNC:VGNC:106255
See related
Ensembl:ENSMMUG00000022282
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table
See COL4A2 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
49
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 17 NC_041770.1 (91748923..91949867)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 17 NC_027909.1 (92019283..92219443)

Chromosome 17 - NC_041770.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114673480 Neighboring gene collagen type IV alpha 1 chain Neighboring gene microRNA mir-7170 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC106994379 Neighboring gene uncharacterized LOC106994380 Neighboring gene RAB20, member RAS oncogene family Neighboring gene NAD(P)HX dehydratase Neighboring gene uncharacterized LOC114673477

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
collagen alpha-2(IV) chain
Names
collagen alpha-2(IV) chain preproprotein

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041770.1 Reference Mmul_10 Primary Assembly

    Range
    91748923..91949867
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015121443.2 → XP_014976929.2  collagen alpha-2(IV) chain isoform X1

    UniProtKB/TrEMBL
    F6X897, I0FGG0, I2CYH3
    Related
    ENSMMUP00000029330.4, ENSMMUT00000031345.4
    Conserved Domains (3) summary
    pfam01391
    Location:800 → 857
    Collagen; Collagen triple helix repeat (20 copies)
    PRK07764
    Location:1303 → 1477
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01413
    Location:1600 → 1709
    C4; C-terminal tandem repeated domain in type 4 procollagen

  2. XM_015121444.2 → XP_014976930.2  collagen alpha-2(IV) chain isoform X2

    UniProtKB/TrEMBL
    I2CYH3
    Conserved Domains (4) summary
    pfam01391
    Location:800 → 857
    Collagen; Collagen triple helix repeat (20 copies)
    PRK07764
    Location:1303 → 1477
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01413
    Location:1490 → 1594
    C4; C-terminal tandem repeated domain in type 4 procollagen
    cl02467
    Location:1600 → 1627
    C4; C-terminal tandem repeated domain in type 4 procollagen
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials