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TRIM39 E3 ubiquitin-protein ligase TRIM39 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 100426750, updated on 9-Nov-2023

Summary

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Gene symbol
TRIM39
Gene description
E3 ubiquitin-protein ligase TRIM39
Locus tag
EGK_14667
See related
Ensembl:ENSMMUG00000011682
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
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Genomic context

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Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (139531964..139549019, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (31050100..31067162)

Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene farnesyl pyrophosphate synthase pseudogene Neighboring gene ribonuclease P/MRP subunit p21 Neighboring gene uncharacterized LOC114677366 Neighboring gene tripartite motif containing 26 Neighboring gene uncharacterized LOC106997882

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the primate TRIM gene family reveals the recent evolution in primates. Qiu S, et al. Mol Genet Genomics, 2020 Sep. PMID 32564135

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of apoptotic signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein stabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM39
Names
tripartite motif-containing protein 39

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041757.1 Reference Mmul_10 Primary Assembly

    Range
    139531964..139549019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015135874.2 → XP_014991360.1  E3 ubiquitin-protein ligase TRIM39

    UniProtKB/TrEMBL
    A0A8J8XC54, F7BHH4, F7HEN1, G7MRE9
    Related
    ENSMMUP00000015337.2, ENSMMUT00000016367.4
    Conserved Domains (4) summary
    TIGR02169
    Location:149 → 270
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd13745
    Location:305 → 483
    SPRY_PRY_TRIM39; PRY/SPRY domain in tripartite motif-binding protein 39 (TRIM39) and TRIM39-like
    cd16601
    Location:26 → 69
    RING-HC_TRIM39_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 39 (TRIM39) and similar proteins
    cd19780
    Location:103 → 146
    Bbox2_TRIM39-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM39, TRIM58 and similar proteins

  2. XM_015135875.2 → XP_014991361.1  E3 ubiquitin-protein ligase TRIM39

    UniProtKB/TrEMBL
    A0A8J8XC54, F7BHH4, F7HEN1, G7MRE9
    Related
    ENSMMUP00000034191.3, ENSMMUT00000041156.3
    Conserved Domains (4) summary
    TIGR02169
    Location:149 → 270
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd13745
    Location:305 → 483
    SPRY_PRY_TRIM39; PRY/SPRY domain in tripartite motif-binding protein 39 (TRIM39) and TRIM39-like
    cd16601
    Location:26 → 69
    RING-HC_TRIM39_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 39 (TRIM39) and similar proteins
    cd19780
    Location:103 → 146
    Bbox2_TRIM39-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM39, TRIM58 and similar proteins

  3. XM_015135879.2 → XP_014991365.1  E3 ubiquitin-protein ligase TRIM39

    UniProtKB/TrEMBL
    A0A8J8XC54, F7BHH4, F7HEN1, G7MRE9
    Conserved Domains (4) summary
    TIGR02169
    Location:149 → 270
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd13745
    Location:305 → 483
    SPRY_PRY_TRIM39; PRY/SPRY domain in tripartite motif-binding protein 39 (TRIM39) and TRIM39-like
    cd16601
    Location:26 → 69
    RING-HC_TRIM39_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 39 (TRIM39) and similar proteins
    cd19780
    Location:103 → 146
    Bbox2_TRIM39-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM39, TRIM58 and similar proteins

  4. XM_015135876.2 → XP_014991362.1  E3 ubiquitin-protein ligase TRIM39

    UniProtKB/TrEMBL
    A0A8J8XC54, F7BHH4, F7HEN1, G7MRE9
    Conserved Domains (4) summary
    TIGR02169
    Location:149 → 270
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd13745
    Location:305 → 483
    SPRY_PRY_TRIM39; PRY/SPRY domain in tripartite motif-binding protein 39 (TRIM39) and TRIM39-like
    cd16601
    Location:26 → 69
    RING-HC_TRIM39_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 39 (TRIM39) and similar proteins
    cd19780
    Location:103 → 146
    Bbox2_TRIM39-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM39, TRIM58 and similar proteins

  5. XM_015135878.2 → XP_014991364.1  E3 ubiquitin-protein ligase TRIM39

    UniProtKB/TrEMBL
    A0A8J8XC54, F7BHH4, F7HEN1, G7MRE9
    Conserved Domains (4) summary
    TIGR02169
    Location:149 → 270
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd13745
    Location:305 → 483
    SPRY_PRY_TRIM39; PRY/SPRY domain in tripartite motif-binding protein 39 (TRIM39) and TRIM39-like
    cd16601
    Location:26 → 69
    RING-HC_TRIM39_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 39 (TRIM39) and similar proteins
    cd19780
    Location:103 → 146
    Bbox2_TRIM39-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM39, TRIM58 and similar proteins

  6. XM_028846903.1 → XP_028702736.1  E3 ubiquitin-protein ligase TRIM39

    UniProtKB/TrEMBL
    A0A8J8XC54, F7BHH4, F7HEN1, G7MRE9
    Conserved Domains (4) summary
    TIGR02169
    Location:149 → 270
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    cd13745
    Location:305 → 483
    SPRY_PRY_TRIM39; PRY/SPRY domain in tripartite motif-binding protein 39 (TRIM39) and TRIM39-like
    cd16601
    Location:26 → 69
    RING-HC_TRIM39_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 39 (TRIM39) and similar proteins
    cd19780
    Location:103 → 146
    Bbox2_TRIM39-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM39, TRIM58 and similar proteins
Nucleotide Protein
Heading Accession and Version

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