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ZBED1 zinc finger BED-type containing 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 100425956, updated on 8-Mar-2024

Summary

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Official Symbol
ZBED1provided by VGNC
Official Full Name
zinc finger BED-type containing 1provided by VGNC
Primary source
VGNC:VGNC:79956
Locus tag
EGK_20225
See related
Ensembl:ENSMMUG00000007514
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human all
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Genomic context

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Location:
chromosome: X
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) X NC_041774.1 (2056239..2071111, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) X NC_027913.1 (1434134..1448979, complement)

Chromosome X - NC_041774.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114674778 Neighboring gene uncharacterized LOC114674783 Neighboring gene dehydrogenase/reductase X-linked Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC106995144

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 SUMO-protein ligase ZBED1; zinc finger BED domain-containing protein 1
Names
dREF-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001266708.1 → NP_001253637.1  E3 SUMO-protein ligase ZBED1

    See identical proteins and their annotated locations for NP_001253637.1

    Status: PROVISIONAL

    Source sequence(s)
    JV048673
    UniProtKB/TrEMBL
    A0A5F8AHX3, A0A8J8Y5E6, F6QDB5, G7NS07
    Related
    ENSMMUP00000077698.1, ENSMMUT00000085817.1
    Conserved Domains (3) summary
    pfam02892
    Location:23 → 72
    zf-BED; BED zinc finger
    pfam05699
    Location:571 → 650
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    pfam14372
    Location:412 → 511
    DUF4413; Domain of unknown function (DUF4413)

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041774.1 Reference Mmul_10 Primary Assembly

    Range
    2056239..2071111 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028841621.1 → XP_028697454.1  zinc finger BED domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A5F8AHX3, A0A8J8Y5E6, F6QDB5, G7NS07
    Conserved Domains (3) summary
    pfam02892
    Location:23 → 72
    zf-BED; BED zinc finger
    pfam05699
    Location:571 → 650
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    pfam14372
    Location:412 → 511
    DUF4413; Domain of unknown function (DUF4413)

  2. XM_028841620.1 → XP_028697453.1  zinc finger BED domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A5F8AHX3, A0A8J8Y5E6, F6QDB5, G7NS07
    Related
    ENSMMUP00000009862.2, ENSMMUT00000010509.4
    Conserved Domains (3) summary
    pfam02892
    Location:23 → 72
    zf-BED; BED zinc finger
    pfam05699
    Location:571 → 650
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    pfam14372
    Location:412 → 511
    DUF4413; Domain of unknown function (DUF4413)
Nucleotide Protein
Heading Accession and Version

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