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LINC02532 long intergenic non-protein coding RNA 2532 [ Homo sapiens (human) ]

Gene ID: 100422737, updated on 17-Sep-2024

Summary

Official Symbol
LINC02532provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2532provided by HGNC
Primary source
HGNC:HGNC:53549
See related
Ensembl:ENSG00000235142 AllianceGenome:HGNC:53549
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in kidney (RPKM 13.1), gall bladder (RPKM 9.8) and 2 other tissues See more
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Genomic context

See LINC02532 in Genome Data Viewer
Location:
6q21
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (106717452..106787541, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (107893570..107963632, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (107165327..107235416, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377927 Neighboring gene long intergenic non-protein coding RNA 2526 Neighboring gene RNA, U6 small nuclear 117, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:107196222-107197147 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24894 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:107222075-107222575 Neighboring gene Sharpr-MPRA regulatory region 10433 Neighboring gene microRNA 587 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:107252150-107252910 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24895 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24896 Neighboring gene uncharacterized LOC124901552 Neighboring gene uncharacterized LOC105377928

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Clone Names

  • FLJ22314, FLJ41422, FLJ42409

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033557.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK025967, DA628975
    Related
    ENST00000436659.6
  2. NR_147986.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL080314, BX116847, DA628975
    Related
    ENST00000670549.2
  3. NR_147987.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL080314, DA627235
    Related
    ENST00000433965.8

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    106717452..106787541 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    107893570..107963632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_015365.1: Suppressed sequence

    Description
    NR_015365.1: This RefSeq was permanently suppressed because currently there is not sufficient data to support this transcript.