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LOC100421201 piggyBac transposable element derived 3 pseudogene [ Homo sapiens (human) ]

Gene ID: 100421201, updated on 10-Oct-2023

Summary

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Gene symbol
LOC100421201
Gene description
piggyBac transposable element derived 3 pseudogene
See related
Ensembl:ENSG00000255853
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
12q24.32
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (126510902..126511700, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (126519379..126520177, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (126995448..126996246, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2825 Neighboring gene long intergenic non-protein coding RNA 2350 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:126932549-126933748 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:126937681-126938182 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:126938183-126938682 Neighboring gene long intergenic non-protein coding RNA 2347 Neighboring gene family with sequence similarity 32 member E, pseudogene Neighboring gene Sharpr-MPRA regulatory region 7999 Neighboring gene piggyBac transposable element derived 3 pseudogene 3 Neighboring gene NADH:ubiquinone oxidoreductase subunit A5 pseudogene 6 Neighboring gene uncharacterized LOC100996671

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_024050.2 

    Range
    101..899
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    126510902..126511700 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    126519379..126520177 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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