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LOC100420587 SHC binding and spindle associated 1 pseudogene [ Homo sapiens (human) ]

Gene ID: 100420587, updated on 23-Nov-2021

Summary

Gene symbol
LOC100420587
Gene description
SHC binding and spindle associated 1 pseudogene
See related
Ensembl:ENSG00000283403
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LOC100420587 in Genome Data Viewer
Location:
19q12
Exon count:
10
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (28435388..28727694, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (28926295..29218601, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927151 Neighboring gene zinc finger protein 709 pseudogene Neighboring gene uncharacterized LOC105372346 Neighboring gene uncharacterized LOC107985269 Neighboring gene uncharacterized LOC105372349 Neighboring gene uncharacterized LOC102724908 Neighboring gene Sharpr-MPRA regulatory region 5210 Neighboring gene mannosidase alpha class 1A member 2 pseudogene 1 Neighboring gene uncharacterized LOC107985336

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

Associated conditions

Description Tests
Bivariate genome-wide association analyses identified genes with pleiotropic effects for femoral neck bone geometry and age at menarche.
GeneReviews: Not available
Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.
GeneReviews: Not available

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110759.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC068609, DB120589, HY016521
    Related
    ENST00000592347.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    28435388..28727694 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_024175.1: Suppressed sequence

    Description
    NG_024175.1: This RefSeq was permanently suppressed because it is now thought that this is a transcribed pseudogene.
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