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HMGB1P17 high mobility group box 1 pseudogene 17 [ Homo sapiens (human) ]

Gene ID: 100419974, updated on 4-Mar-2025

Summary

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Official Symbol
HMGB1P17provided by HGNC
Official Full Name
high mobility group box 1 pseudogene 17provided by HGNC
Primary source
HGNC:HGNC:39099
See related
Ensembl:ENSG00000217482 AllianceGenome:HGNC:39099
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See HMGB1P17 in Genome Data Viewer
Location:
6q23.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (135636110..135636713, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (136824376..136824979, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (135957248..135957851, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene AHI1 divergent transcript Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene 73 Neighboring gene long intergenic non-protein coding RNA 2524 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:136043594-136044793 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:136091816-136092316 Neighboring gene uncharacterized LOC105378012 Neighboring gene uncharacterized LOC101928326

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Retroposed copies of the HMG genes: a window to genome dynamics. Strichman-Almashanu LZ, et al. Genome Res, 2003 May. PMID 12727900, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_025876.1 

    Range
    101..704
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    135636110..135636713 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    136824376..136824979 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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