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LOC100419170 toll like receptor 2 pseudogene [ Homo sapiens (human) ]

Gene ID: 100419170, updated on 23-Nov-2021

Summary

Gene symbol
LOC100419170
Gene description
toll like receptor 2 pseudogene
See related
Ensembl:ENSG00000250771
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in placenta (RPKM 1.4), gall bladder (RPKM 1.2) and 10 other tissues See more
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Genomic context

See LOC100419170 in Genome Data Viewer
Location:
4q31.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (153640168..153681186)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (154561320..154602338)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene meiotic nuclear divisions 1 Neighboring gene RNA, 7SL, cytoplasmic 419, pseudogene Neighboring gene transmembrane 131 like Neighboring gene uncharacterized LOC105377498 Neighboring gene WD repeat domain 45 pseudogene 1 Neighboring gene uncharacterized LOC105377499 Neighboring gene toll like receptor 2 Neighboring gene ring finger protein 175

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134873.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC106865, BC032464
    Related
    ENST00000602666.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    153640168..153681186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_025262.1: Suppressed sequence

    Description
    NG_025262.1: This RefSeq was removed because it is now thought that this pseudogene is transcribed.
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