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ABLIM3 actin binding LIM protein family member 3 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100415180, updated on 3-Dec-2024
Gene symbol
ABLIM3
Gene description
actin binding LIM protein family member 3
See related
Ensembl:ENSCJAG00000021152
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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See ABLIM3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 2 NC_071443.1 (45894404..46019303)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 2 NC_048384.1 (46165474..46290459)

Chromosome 2 - NC_071443.1Genomic Context describing neighboring genes Neighboring gene SH3 domain and tetratricopeptide repeats 2 Neighboring gene U6 spliceosomal RNA Neighboring gene translationally-controlled tumor protein-like Neighboring gene actin filament associated protein 1 like 1 Neighboring gene uncharacterized LOC128930559 Neighboring gene GrpE like 2, mitochondrial

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lamellipodium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
actin-binding LIM protein 3

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071443.1 Reference mCalJa1.2.pat.X

    Range
    45894404..46019303
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002744352.4 → XP_002744398.2  actin-binding LIM protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A2R8MNR3, F7G5I7, F7GH06, U3CRC9
    Conserved Domains (6) summary
    smart00153
    Location:647 → 682
    VHP; Villin headpiece domain
    cd09327
    Location:23 → 74
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:79 → 134
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:151 → 202
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:210 → 265
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:273 → 646
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  2. XM_054250566.1 → XP_054106541.1  actin-binding LIM protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A2R8MNR3

  3. XM_054250570.1 → XP_054106545.1  actin-binding LIM protein 3 isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials