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NFXL1 nuclear transcription factor, X-box binding like 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100413639, updated on 8-Mar-2024

Summary

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Gene symbol
NFXL1
Gene description
nuclear transcription factor, X-box binding like 1
See related
Ensembl:ENSCJAG00000018893
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 3 NC_071444.1 (142066044..142134165)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 3 NC_048385.1 (144631118..144699239)

Chromosome 3 - NC_071444.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118152302 Neighboring gene NIPA like domain containing 1 Neighboring gene cyclic nucleotide gated channel subunit alpha 1 Neighboring gene corin, serine peptidase Neighboring gene ATPase phospholipid transporting 10D (putative) Neighboring gene COMM domain containing 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NF-X1-type zinc finger protein NFXL1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071444.1 Reference mCalJa1.2.pat.X

    Range
    142066044..142134165
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035293745.1 → XP_035149636.1  NF-X1-type zinc finger protein NFXL1 isoform X1

    UniProtKB/TrEMBL
    F7HUR4
    Conserved Domains (2) summary
    cd06008
    Location:416 → 464
    NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
    cd16697
    Location:160 → 222
    RING-CH-C4HC3_NFXL1; RING-CH finger, H2 subclass (C4HC3-type), found in nuclear transcription factor, X-box binding-like 1 (NFXL1) and similar proteins

  2. XM_035293744.1 → XP_035149635.1  NF-X1-type zinc finger protein NFXL1 isoform X1

    UniProtKB/TrEMBL
    F7HUR4
    Conserved Domains (2) summary
    cd06008
    Location:416 → 464
    NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
    cd16697
    Location:160 → 222
    RING-CH-C4HC3_NFXL1; RING-CH finger, H2 subclass (C4HC3-type), found in nuclear transcription factor, X-box binding-like 1 (NFXL1) and similar proteins

  3. XM_035293746.1 → XP_035149637.1  NF-X1-type zinc finger protein NFXL1 isoform X1

    UniProtKB/TrEMBL
    F7HUR4
    Conserved Domains (2) summary
    cd06008
    Location:416 → 464
    NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
    cd16697
    Location:160 → 222
    RING-CH-C4HC3_NFXL1; RING-CH finger, H2 subclass (C4HC3-type), found in nuclear transcription factor, X-box binding-like 1 (NFXL1) and similar proteins

  4. XM_054253372.1 → XP_054109347.1  NF-X1-type zinc finger protein NFXL1 isoform X2

Nucleotide Protein
Heading Accession and Version

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