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AP1S2 adaptor related protein complex 1 subunit sigma 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100411052, updated on 8-Mar-2024
Gene symbol
AP1S2
Gene description
adaptor related protein complex 1 subunit sigma 2
See related
Ensembl:ENSCJAG00000004393
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Location:
chromosome: X
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) X NC_071464.1 (14692597..14723445, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) X NC_048405.1 (14494673..14525885, complement)

Chromosome X - NC_071464.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein SA-like Neighboring gene carbonic anhydrase 5B Neighboring gene zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 Neighboring gene translation initiation factor IF-2-like Neighboring gene U5 spliceosomal RNA Neighboring gene gastrin releasing peptide receptor

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of AP-1 adaptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
AP-1 complex subunit sigma-2
Names
adaptor related protein complex 1 sigma 2 subunit

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071464.1 Reference mCalJa1.2.pat.X

    Range
    14692597..14723445 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008989003.4 → XP_008987251.1  AP-1 complex subunit sigma-2

    See identical proteins and their annotated locations for XP_008987251.1

    UniProtKB/TrEMBL
    A0A2R8PC25, U3BXZ2
    Related
    ENSCJAP00000007971.2
    Conserved Domains (1) summary
    cd14831
    Location:2 → 144
    AP1_sigma; AP-1 complex subunit sigma

RNA

  1. XR_008478987.1 RNA Sequence

  2. XR_008478985.1 RNA Sequence

  3. XR_008478984.1 RNA Sequence

  4. XR_008478986.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials