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LOC100410611 hemoglobin subunit beta [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100410611, updated on 2-Nov-2023

Summary

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Gene symbol
LOC100410611
Gene description
hemoglobin subunit beta
See related
Ensembl:ENSCJAG00000020214
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Also known as
HBB
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Genomic context

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Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 11 NC_071452.1 (67520934..67522632, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 11 NC_048393.1 (68737609..68739307, complement)

Chromosome 11 - NC_071452.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 51V1 Neighboring gene uncharacterized LOC118145799 Neighboring gene hemoglobin subunit delta Neighboring gene uncharacterized LOC100896962

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The phylogenetic history of New World monkey beta globin reveals a platyrrhine beta to delta gene conversion in the atelid ancestry. Prychitko T, et al. Mol Phylogenet Evol, 2005 Apr. PMID 15737593
  2. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables haptoglobin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hemoglobin alpha binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables organic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxygen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxygen carrier activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hydrogen peroxide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oxygen transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in blood microparticle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of haptoglobin-hemoglobin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of hemoglobin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hemoglobin subunit beta
Names
Beta-globin
Hemoglobin beta chain
beta globin
hemoglobin, beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071452.1 Reference mCalJa1.2.pat.X

    Range
    67520934..67522632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002754891.3 → XP_002754937.1  hemoglobin subunit beta

    See identical proteins and their annotated locations for XP_002754937.1

    UniProtKB/Swiss-Prot
    B0VXB3, Q6WN28
    UniProtKB/TrEMBL
    F6VEZ4, U3FQP9
    Related
    ENSCJAP00000037583.2, ENSCJAT00000039700.2
    Conserved Domains (1) summary
    cd08925
    Location:7 → 146
    Hb-beta_like; Hemoglobin beta, gamma, delta, epsilon, and related Hb subunits
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6WN28.3 GenPept UniProtKB/Swiss-Prot:Q6WN28

Gene LinkOut

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