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NR4A2 nuclear receptor subfamily 4 group A member 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100409975, updated on 8-Mar-2024
Gene symbol
NR4A2
Gene description
nuclear receptor subfamily 4 group A member 2
See related
Ensembl:ENSCJAG00000015464
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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See NR4A2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 6 NC_071447.1 (70383491..70401267)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 6 NC_048388.1 (71350876..71368659)

Chromosome 6 - NC_071447.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene heme-binding protein 2-like Neighboring gene uncharacterized LOC118154789

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear glucocorticoid receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to corticotropin-releasing hormone stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dopaminergic neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
nuclear receptor subfamily 4 group A member 2

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071447.1 Reference mCalJa1.2.pat.X

    Range
    70383491..70401267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035304860.2 → XP_035160751.1  nuclear receptor subfamily 4 group A member 2 isoform X1

    UniProtKB/TrEMBL
    U3FW56
    Conserved Domains (2) summary
    cd07071
    Location:361 → 598
    NR_LBD_Nurr1; The ligand binding domain of Nurr1, a member of conserved family of nuclear receptors
    cd06969
    Location:261 → 335
    NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B

  2. XM_035304862.2 → XP_035160753.1  nuclear receptor subfamily 4 group A member 2 isoform X1

    UniProtKB/TrEMBL
    U3FW56
    Conserved Domains (2) summary
    cd07071
    Location:361 → 598
    NR_LBD_Nurr1; The ligand binding domain of Nurr1, a member of conserved family of nuclear receptors
    cd06969
    Location:261 → 335
    NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B

  3. XM_035304863.2 → XP_035160754.1  nuclear receptor subfamily 4 group A member 2 isoform X2

    Conserved Domains (2) summary
    cd06969
    Location:261 → 335
    NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B
    cl11397
    Location:362 → 573
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  4. XM_003733180.3 → XP_003733228.1  nuclear receptor subfamily 4 group A member 2 isoform X1

    See identical proteins and their annotated locations for XP_003733228.1

    UniProtKB/TrEMBL
    U3FW56
    Related
    ENSCJAP00000028517.1
    Conserved Domains (2) summary
    cd07071
    Location:361 → 598
    NR_LBD_Nurr1; The ligand binding domain of Nurr1, a member of conserved family of nuclear receptors
    cd06969
    Location:261 → 335
    NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B

  5. XM_035304864.2 → XP_035160755.1  nuclear receptor subfamily 4 group A member 2 isoform X3

    UniProtKB/TrEMBL
    F7BPB9
    Conserved Domains (2) summary
    cd06969
    Location:261 → 335
    NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B
    cl11397
    Location:367 → 477
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  6. XM_008998872.3 → XP_008997120.1  nuclear receptor subfamily 4 group A member 2 isoform X2

    Conserved Domains (2) summary
    cd06969
    Location:261 → 335
    NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B
    cl11397
    Location:362 → 573
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  7. XM_002749430.6 → XP_002749476.2  nuclear receptor subfamily 4 group A member 2 isoform X4

    Conserved Domains (2) summary
    cd07071
    Location:298 → 535
    NR_LBD_Nurr1; The ligand binding domain of Nurr1, a member of conserved family of nuclear receptors
    cd06969
    Location:198 → 272
    NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B

  8. XM_035304866.2 → XP_035160757.1  nuclear receptor subfamily 4 group A member 2 isoform X5

    Conserved Domains (2) summary
    cd06969
    Location:198 → 272
    NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B
    cl11397
    Location:299 → 510
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

RNA

  1. XR_001912230.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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