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ZIC1 Zic family member 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100407505, updated on 8-Mar-2024
Gene symbol
ZIC1
Gene description
Zic family member 1
See related
Ensembl:ENSCJAG00000001524
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Location:
chromosome: 17
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 17 NC_071458.1 (30805954..30811173, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 17 NC_048399.1 (30967880..30973092, complement)

Chromosome 17 - NC_071458.1Genomic Context describing neighboring genes Neighboring gene midkine-like Neighboring gene uncharacterized LOC103788791 Neighboring gene uncharacterized LOC128930050 Neighboring gene Zic family member 4 Neighboring gene nucleosome assembly protein 1-like 1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
zinc finger protein ZIC 1

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071458.1 Reference mCalJa1.2.pat.X

    Range
    30805954..30811173 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002807658.6 → XP_002807704.3  zinc finger protein ZIC 1

    UniProtKB/TrEMBL
    F7IQP6, U3CJ56
    Related
    ENSCJAP00000002716.1
    Conserved Domains (3) summary
    COG5189
    Location:298 → 382
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:276 → 296
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam18366
    Location:219 → 264
    zf_ZIC; Zic proteins zinc finger domain
Nucleotide Protein
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