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ACLY ATP citrate lyase [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100405725, updated on 8-Mar-2024

Summary

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Gene symbol
ACLY
Gene description
ATP citrate lyase
See related
Ensembl:ENSCJAG00000014988
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See ACLY in Genome Data Viewer
Location:
chromosome: 5
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 5 NC_071446.1 (87298430..87349286)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 5 NC_048387.1 (90075914..90126810)

Chromosome 5 - NC_071446.1Genomic Context describing neighboring genes Neighboring gene outer dynein arm docking complex subunit 4 Neighboring gene 40S ribosomal protein S15-like Neighboring gene 39S ribosomal protein L22, mitochondrial-like Neighboring gene uncharacterized LOC118153759 Neighboring gene kelch like family member 11 Neighboring gene kelch like family member 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP citrate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in citrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-citrate synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071446.1 Reference mCalJa1.2.pat.X

    Range
    87298430..87349286
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008997582.4 → XP_008995830.1  ATP-citrate synthase isoform X1

    See identical proteins and their annotated locations for XP_008995830.1

    UniProtKB/TrEMBL
    F7DBY4, U3BMN6
    Related
    ENSCJAP00000027760.1
    Conserved Domains (2) summary
    cl25712
    Location:1 → 419
    SucC; Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
    cl26126
    Location:489 → 1094
    Ligase_CoA; CoA-ligase

  2. XM_008997584.4 → XP_008995832.1  ATP-citrate synthase isoform X2

    See identical proteins and their annotated locations for XP_008995832.1

    UniProtKB/TrEMBL
    F7DSU4, U3B4I1
    Related
    ENSCJAP00000027745.2
    Conserved Domains (2) summary
    PLN02522
    Location:479 → 1084
    PLN02522; ATP citrate (pro-S)-lyase
    cl29684
    Location:1 → 419
    Citrate_bind; ATP citrate lyase citrate-binding

  3. XM_008997583.4 → XP_008995831.1  ATP-citrate synthase isoform X1

    See identical proteins and their annotated locations for XP_008995831.1

    UniProtKB/TrEMBL
    F7DBY4, U3BMN6
    Related
    ENSCJAP00000027756.2
    Conserved Domains (2) summary
    cl25712
    Location:1 → 419
    SucC; Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
    cl26126
    Location:489 → 1094
    Ligase_CoA; CoA-ligase

  4. XM_035300530.2 → XP_035156421.1  ATP-citrate synthase isoform X2

    UniProtKB/TrEMBL
    F7DSU4, U3B4I1
    Conserved Domains (2) summary
    PLN02522
    Location:479 → 1084
    PLN02522; ATP citrate (pro-S)-lyase
    cl29684
    Location:1 → 419
    Citrate_bind; ATP citrate lyase citrate-binding
Nucleotide Protein
Heading Accession and Version

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