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MEIS1 Meis homeobox 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100403610, updated on 8-Mar-2024

Summary

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Gene symbol
MEIS1
Gene description
Meis homeobox 1
See related
Ensembl:ENSCJAG00000006613
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 14 NC_071455.1 (45381103..45523211, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 14 NC_048396.1 (44345337..44487772, complement)

Chromosome 14 - NC_071455.1Genomic Context describing neighboring genes Neighboring gene DNA (cytosine-5)-methyltransferase 3A-like Neighboring gene uncharacterized LOC118147305 Neighboring gene uncharacterized LOC118147304 Neighboring gene uncharacterized LOC100894356 Neighboring gene uncharacterized LOC118147306

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in animal organ morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in eye development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in hemopoiesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Meis1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071455.1 Reference mCalJa1.2.pat.X

    Range
    45381103..45523211 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002757706.6 → XP_002757752.2  homeobox protein Meis1 isoform X1

    See identical proteins and their annotated locations for XP_002757752.2

    UniProtKB/TrEMBL
    F7HJ52
    Related
    ENSCJAP00000012360.2
    Conserved Domains (3) summary
    pfam09606
    Location:332 → 453
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam05920
    Location:290 → 329
    Homeobox_KN; Homeobox KN domain
    pfam16493
    Location:108 → 192
    Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1

  2. XM_035272407.2 → XP_035128298.1  homeobox protein Meis1 isoform X2

    UniProtKB/TrEMBL
    A0A2R8PAA0
    Conserved Domains (3) summary
    pfam09606
    Location:267 → 388
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam05920
    Location:225 → 264
    Homeobox_KN; Homeobox KN domain
    pfam16493
    Location:43 → 127
    Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1

  3. XM_003734725.5 → XP_003734773.1  homeobox protein Meis1 isoform X3

    See identical proteins and their annotated locations for XP_003734773.1

    UniProtKB/TrEMBL
    A0A2R8MIP5, F7HDM8
    Related
    ENSCJAP00000012355.2
    Conserved Domains (2) summary
    pfam05920
    Location:290 → 329
    Homeobox_KN; Homeobox KN domain
    pfam16493
    Location:108 → 192
    Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1

  4. XM_035272408.2 → XP_035128299.1  homeobox protein Meis1 isoform X4

    UniProtKB/TrEMBL
    F7HHR6
    Conserved Domains (2) summary
    pfam05920
    Location:225 → 264
    Homeobox_KN; Homeobox KN domain
    pfam16493
    Location:43 → 127
    Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1
Nucleotide Protein
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