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TRIM3 tripartite motif containing 3 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100402873, updated on 8-Mar-2024

Summary

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Gene symbol
TRIM3
Gene description
tripartite motif containing 3
See related
Ensembl:ENSCJAG00000014089
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 11 NC_071452.1 (68843712..68870049, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 11 NC_048393.1 (70047563..70074143, complement)

Chromosome 11 - NC_071452.1Genomic Context describing neighboring genes Neighboring gene amyloid beta precursor protein binding family B member 1 Neighboring gene hemopexin Neighboring gene ADP ribosylation factor interacting protein 2 Neighboring gene translocase of inner mitochondrial membrane 10B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tripartite motif-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071452.1 Reference mCalJa1.2.pat.X

    Range
    68843712..68870049 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002754944.5 → XP_002754990.1  tripartite motif-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_002754990.1

    UniProtKB/TrEMBL
    F6X294, U3BMA3
    Related
    ENSCJAP00000003621.2
    Conserved Domains (5) summary
    smart00502
    Location:158 → 284
    BBC; B-Box C-terminal domain
    smart00557
    Location:322 → 419
    IG_FLMN; Filamin-type immunoglobulin domains
    cd14960
    Location:471 → 744
    NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
    cd16768
    Location:19 → 63
    RING-HC_TRIM3; RING finger, HC subclass, found in tripartite motif-containing protein 3 (TRIM3)
    cl00034
    Location:107 → 153
    Bbox_SF; B-box-type zinc finger superfamily

  2. XM_002754943.4 → XP_002754989.1  tripartite motif-containing protein 3 isoform X1

    See identical proteins and their annotated locations for XP_002754989.1

    UniProtKB/TrEMBL
    F6X294, U3BMA3
    Related
    ENSCJAP00000025974.1
    Conserved Domains (5) summary
    smart00502
    Location:158 → 284
    BBC; B-Box C-terminal domain
    smart00557
    Location:322 → 419
    IG_FLMN; Filamin-type immunoglobulin domains
    cd14960
    Location:471 → 744
    NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
    cd16768
    Location:19 → 63
    RING-HC_TRIM3; RING finger, HC subclass, found in tripartite motif-containing protein 3 (TRIM3)
    cl00034
    Location:107 → 153
    Bbox_SF; B-box-type zinc finger superfamily

  3. XM_009007590.4 → XP_009005838.1  tripartite motif-containing protein 3 isoform X2

    UniProtKB/TrEMBL
    U3BMA3
    Conserved Domains (7) summary
    smart00502
    Location:73 → 199
    BBC; B-Box C-terminal domain
    smart00336
    Location:25 → 66
    BBOX; B-Box-type zinc finger
    smart00557
    Location:237 → 334
    IG_FLMN; Filamin-type immunoglobulin domains
    COG3391
    Location:401 → 650
    YncE; DNA-binding beta-propeller fold protein YncE [General function prediction only]
    cd14960
    Location:386 → 659
    NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
    pfam00630
    Location:237 → 330
    Filamin; Filamin/ABP280 repeat
    pfam01442
    Location:70 → 224
    Apolipoprotein; Apolipoprotein A1/A4/E domain

  4. XM_035265631.2 → XP_035121522.1  tripartite motif-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    F6X294, U3BMA3
    Conserved Domains (5) summary
    smart00502
    Location:158 → 284
    BBC; B-Box C-terminal domain
    smart00557
    Location:322 → 419
    IG_FLMN; Filamin-type immunoglobulin domains
    cd14960
    Location:471 → 744
    NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
    cd16768
    Location:19 → 63
    RING-HC_TRIM3; RING finger, HC subclass, found in tripartite motif-containing protein 3 (TRIM3)
    cl00034
    Location:107 → 153
    Bbox_SF; B-box-type zinc finger superfamily

  5. XM_002754945.3 → XP_002754991.1  tripartite motif-containing protein 3 isoform X3

    UniProtKB/TrEMBL
    U3BMA3
    Related
    ENSCJAP00000025972.1
    Conserved Domains (6) summary
    smart00502
    Location:63 → 189
    BBC; B-Box C-terminal domain
    smart00336
    Location:26 → 56
    BBOX; B-Box-type zinc finger
    smart00557
    Location:227 → 324
    IG_FLMN; Filamin-type immunoglobulin domains
    COG3391
    Location:391 → 640
    YncE; DNA-binding beta-propeller fold protein YncE [General function prediction only]
    cd14960
    Location:376 → 649
    NHL_TRIM2_like; NHL repeat domain of the tripartite motif-containing protein 2 (TRIM2) and related proteins
    pfam00630
    Location:227 → 320
    Filamin; Filamin/ABP280 repeat
Nucleotide Protein
Heading Accession and Version

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