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TBR1 T-box brain transcription factor 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100394386, updated on 8-Mar-2024
Gene symbol
TBR1
Gene description
T-box brain transcription factor 1
See related
Ensembl:ENSCJAG00000005603
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 6 NC_071447.1 (65152514..65163131, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 6 NC_048388.1 (66114341..66124964, complement)

Chromosome 6 - NC_071447.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene keratin, type II cytoskeletal 8-like Neighboring gene proteasome 26S subunit, non-ATPase 14 Neighboring gene uncharacterized LOC118154573 Neighboring gene U1 spliceosomal RNA

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in commitment of neuronal cell to specific neuron type in forebrain IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of neuron projection development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
T-box brain protein 1
Names
T-box, brain 1

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071447.1 Reference mCalJa1.2.pat.X

    Range
    65152514..65163131 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002749394.7 → XP_002749440.1  T-box brain protein 1

    See identical proteins and their annotated locations for XP_002749440.1

    UniProtKB/TrEMBL
    A0A8I3W3Z3, U3DH50
    Related
    ENSCJAP00000010247.2
    Conserved Domains (2) summary
    pfam16176
    Location:418 → 680
    T-box_assoc; T-box transcription factor-associated
    cd20204
    Location:203 → 393
    T-box_TBR1; DNA-binding domain of T-box brain protein 1 and related T-box proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials