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NLGN1 neuroligin 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100393486, updated on 8-Mar-2024

Summary

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Gene symbol
NLGN1
Gene description
neuroligin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 17 NC_071458.1 (5778641..6667127, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 17 NC_048399.1 (5920075..6808592, complement)

Chromosome 17 - NC_071458.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L8-like Neighboring gene 60 kDa heat shock protein, mitochondrial-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC118148773 Neighboring gene spermatogenesis associated 16 Neighboring gene small nucleolar RNA U13 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables neurexin family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in modulation of chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in postsynaptic membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in presynaptic membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic specialization membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuroligin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071458.1 Reference mCalJa1.2.pat.X

    Range
    5778641..6667127 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035277801.2 → XP_035133692.1  neuroligin-1 isoform X1

    Conserved Domains (1) summary
    pfam00135
    Location:52 → 646
    COesterase; Carboxylesterase family

  2. XM_054246932.1 → XP_054102907.1  neuroligin-1 isoform X6

    UniProtKB/TrEMBL
    F7GZ67, U3FSR0

  3. XM_035277799.2 → XP_035133690.1  neuroligin-1 isoform X1

    Conserved Domains (1) summary
    pfam00135
    Location:52 → 646
    COesterase; Carboxylesterase family

  4. XM_054246934.1 → XP_054102909.1  neuroligin-1 isoform X7

  5. XM_054246931.1 → XP_054102906.1  neuroligin-1 isoform X6

    UniProtKB/TrEMBL
    F7GZ67, U3FSR0

  6. XM_054246925.1 → XP_054102900.1  neuroligin-1 isoform X3

  7. XM_054246928.1 → XP_054102903.1  neuroligin-1 isoform X4

  8. XM_035277797.2 → XP_035133688.1  neuroligin-1 isoform X1

    Conserved Domains (1) summary
    pfam00135
    Location:52 → 646
    COesterase; Carboxylesterase family

  9. XM_054246929.1 → XP_054102904.1  neuroligin-1 isoform X6

    UniProtKB/TrEMBL
    F7GZ67, U3FSR0

  10. XM_054246930.1 → XP_054102905.1  neuroligin-1 isoform X6

    UniProtKB/TrEMBL
    F7GZ67, U3FSR0

  11. XM_054246933.1 → XP_054102908.1  neuroligin-1 isoform X7

  12. XM_054246923.1 → XP_054102898.1  neuroligin-1 isoform X3

  13. XM_054246926.1 → XP_054102901.1  neuroligin-1 isoform X4

  14. XM_035277796.2 → XP_035133687.1  neuroligin-1 isoform X1

    Conserved Domains (1) summary
    pfam00135
    Location:52 → 646
    COesterase; Carboxylesterase family

  15. XM_035277804.2 → XP_035133695.1  neuroligin-1 isoform X6

    UniProtKB/TrEMBL
    F7GZ67, U3FSR0
    Conserved Domains (1) summary
    pfam00135
    Location:52 → 606
    COesterase; Carboxylesterase family

  16. XM_035277798.2 → XP_035133689.1  neuroligin-1 isoform X1

    Conserved Domains (1) summary
    pfam00135
    Location:52 → 646
    COesterase; Carboxylesterase family

  17. XM_054246924.1 → XP_054102899.1  neuroligin-1 isoform X3

  18. XM_054246927.1 → XP_054102902.1  neuroligin-1 isoform X4

  19. XM_035277795.2 → XP_035133686.1  neuroligin-1 isoform X1

    Conserved Domains (1) summary
    pfam00135
    Location:52 → 646
    COesterase; Carboxylesterase family

  20. XM_035277800.2 → XP_035133691.1  neuroligin-1 isoform X1

    Conserved Domains (1) summary
    pfam00135
    Location:52 → 646
    COesterase; Carboxylesterase family

  21. XM_054246922.1 → XP_054102897.1  neuroligin-1 isoform X1

  22. XM_035277802.2 → XP_035133693.1  neuroligin-1 isoform X2

    Conserved Domains (1) summary
    pfam00135
    Location:52 → 637
    COesterase; Carboxylesterase family

  23. XM_035277803.2 → XP_035133694.1  neuroligin-1 isoform X5

    Conserved Domains (1) summary
    pfam00135
    Location:52 → 617
    COesterase; Carboxylesterase family

  24. XM_035277805.2 → XP_035133696.1  neuroligin-1 isoform X7

    Conserved Domains (1) summary
    pfam00135
    Location:52 → 597
    COesterase; Carboxylesterase family

  25. XM_008983455.4 → XP_008981703.1  neuroligin-1 isoform X3

    See identical proteins and their annotated locations for XP_008981703.1

    Conserved Domains (2) summary
    COG0657
    Location:159 → 284
    Aes; Acetyl esterase/lipase [Lipid transport and metabolism]
    pfam00135
    Location:50 → 626
    COesterase; Carboxylesterase family

  26. XM_008983456.4 → XP_008981704.1  neuroligin-1 isoform X4

    See identical proteins and their annotated locations for XP_008981704.1

    Conserved Domains (2) summary
    COG0657
    Location:186 → 284
    Aes; Acetyl esterase/lipase [Lipid transport and metabolism]
    pfam00135
    Location:50 → 626
    COesterase; Carboxylesterase family

  27. XM_035277794.2 → XP_035133685.1  neuroligin-1 isoform X1

    Conserved Domains (1) summary
    pfam00135
    Location:52 → 646
    COesterase; Carboxylesterase family

  28. XM_008983457.4 → XP_008981705.1  neuroligin-1 isoform X6

    See identical proteins and their annotated locations for XP_008981705.1

    UniProtKB/TrEMBL
    F7GZ67, U3FSR0
    Conserved Domains (1) summary
    pfam00135
    Location:52 → 606
    COesterase; Carboxylesterase family
Nucleotide Protein
Heading Accession and Version

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