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ABLIM1 actin binding LIM protein 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100389219, updated on 3-Dec-2024
Gene symbol
ABLIM1
Gene description
actin binding LIM protein 1
See related
Ensembl:ENSCJAG00000019303
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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See ABLIM1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 12 NC_071453.1 (104023807..104367636, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 12 NC_048394.1 (104751575..105094949, complement)

Chromosome 12 - NC_071453.1Genomic Context describing neighboring genes Neighboring gene von Willebrand factor A domain containing 2 Neighboring gene U6 spliceosomal RNA Neighboring gene actin filament associated protein 1 like 2 Neighboring gene uncharacterized LOC103796822 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC128929338 Neighboring gene uncharacterized LOC103796823 Neighboring gene FHF complex subunit HOOK interacting protein 2A

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lamellipodium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
actin-binding LIM protein 1

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071453.1 Reference mCalJa1.2.pat.X

    Range
    104023807..104367636 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035269167.2 → XP_035125058.2  actin-binding LIM protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8I3VW74

  2. XM_035269186.2 → XP_035125077.2  actin-binding LIM protein 1 isoform X2

    UniProtKB/TrEMBL
    F7GS23

  3. XM_002756613.5 → XP_002756659.3  actin-binding LIM protein 1 isoform X1

    UniProtKB/TrEMBL
    F7GS23

  4. XM_035269188.2 → XP_035125079.2  actin-binding LIM protein 1 isoform X4

    UniProtKB/TrEMBL
    F7GS23

RNA

  1. XR_008475665.1 RNA Sequence

  2. XR_008475664.1 RNA Sequence

  3. XR_008475669.1 RNA Sequence

  4. XR_008475671.1 RNA Sequence

  5. XR_008475675.1 RNA Sequence

  6. XR_008475668.1 RNA Sequence

  7. XR_008475666.1 RNA Sequence

  8. XR_008475674.1 RNA Sequence

  9. XR_008475672.1 RNA Sequence

  10. XR_008475670.1 RNA Sequence

  11. XR_008475673.1 RNA Sequence

  12. XR_008475676.1 RNA Sequence

  13. XR_008475677.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Research Materials