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NFIC nuclear factor I C [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100388898, updated on 6-Jun-2024

Summary

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Gene symbol
NFIC
Gene description
nuclear factor I C
See related
Ensembl:ENSCJAG00000014813
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 22
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 22 NC_071463.1 (2843830..2866991)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 22 NC_048404.1 (2856092..2956349)

Chromosome 22 - NC_071463.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128930557 Neighboring gene CUGBP Elav-like family member 5 Neighboring gene uncharacterized LOC128930556 Neighboring gene uncharacterized LOC108589452 Neighboring gene uncharacterized LOC128930566 Neighboring gene small integral membrane protein 24

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear factor 1 C-type

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071463.1 Reference mCalJa1.2.pat.X

    Range
    2843830..2866991
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054250724.1 → XP_054106699.1  nuclear factor 1 C-type isoform X1

    UniProtKB/TrEMBL
    U3CJV3, U3D2J2

  2. XM_054250725.1 → XP_054106700.1  nuclear factor 1 C-type isoform X2

    UniProtKB/TrEMBL
    U3E151

  3. XM_054250726.1 → XP_054106701.1  nuclear factor 1 C-type isoform X3

    UniProtKB/TrEMBL
    U3DN82
Nucleotide Protein
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Gene LinkOut

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