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NFIC nuclear factor I C [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100388898, updated on 3-Dec-2024
Gene symbol
NFIC
Gene description
nuclear factor I C
See related
Ensembl:ENSCJAG00000014813
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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See NFIC in Genome Data Viewer
Location:
chromosome: 22
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 22 NC_071463.1 (2843830..2866991)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 22 NC_048404.1 (2856092..2956349)

Chromosome 22 - NC_071463.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128930557 Neighboring gene CUGBP Elav-like family member 5 Neighboring gene uncharacterized LOC128930556 Neighboring gene uncharacterized LOC108589452 Neighboring gene uncharacterized LOC128930566 Neighboring gene small integral membrane protein 24

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
nuclear factor 1 C-type

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071463.1 Reference mCalJa1.2.pat.X

    Range
    2843830..2866991
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054250724.1 → XP_054106699.1  nuclear factor 1 C-type isoform X1

    UniProtKB/TrEMBL
    U3CJV3, U3D2J2

  2. XM_054250725.1 → XP_054106700.1  nuclear factor 1 C-type isoform X2

    UniProtKB/TrEMBL
    U3E151

  3. XM_054250726.1 → XP_054106701.1  nuclear factor 1 C-type isoform X3

    UniProtKB/TrEMBL
    U3DN82
Nucleotide Protein
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