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SATB2 SATB homeobox 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100387368, updated on 3-Dec-2024
Gene symbol
SATB2
Gene description
SATB homeobox 2
See related
Ensembl:ENSCJAG00000004111
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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See SATB2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 6 NC_071447.1 (116667078..116965484, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 6 NC_048388.1 (117859569..118157874, complement)

Chromosome 6 - NC_071447.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118154637 Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC118154640 Neighboring gene formiminotransferase cyclodeaminase N-terminal like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
DNA-binding protein SATB2

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071447.1 Reference mCalJa1.2.pat.X

    Range
    116667078..116965484 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035305235.2 → XP_035161126.1  DNA-binding protein SATB2 isoform X2

    UniProtKB/TrEMBL
    F6RVP0, F6S562
    Conserved Domains (4) summary
    smart00389
    Location:556 → 613
    HOX; Homeodomain
    cd11585
    Location:2 → 97
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:419 → 498
    CUT; CUT domain
    pfam16557
    Location:104 → 174
    CUTL; CUT1-like DNA-binding domain of SATB

  2. XM_054257757.1 → XP_054113732.1  DNA-binding protein SATB2 isoform X2

    UniProtKB/TrEMBL
    F6RVP0, F6S562

  3. XM_035305234.2 → XP_035161125.1  DNA-binding protein SATB2 isoform X2

    UniProtKB/TrEMBL
    F6RVP0, F6S562
    Conserved Domains (4) summary
    smart00389
    Location:556 → 613
    HOX; Homeodomain
    cd11585
    Location:2 → 97
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:419 → 498
    CUT; CUT domain
    pfam16557
    Location:104 → 174
    CUTL; CUT1-like DNA-binding domain of SATB

  4. XM_017973601.3 → XP_017829090.1  DNA-binding protein SATB2 isoform X1

    UniProtKB/TrEMBL
    A0A8I3W3D8, U3CZ49
    Conserved Domains (4) summary
    smart00389
    Location:614 → 671
    HOX; Homeodomain
    cd11585
    Location:60 → 155
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:477 → 556
    CUT; CUT domain
    pfam16557
    Location:162 → 232
    CUTL; CUT1-like DNA-binding domain of SATB

  5. XM_002749606.5 → XP_002749652.1  DNA-binding protein SATB2 isoform X1

    See identical proteins and their annotated locations for XP_002749652.1

    UniProtKB/TrEMBL
    A0A8I3W3D8, U3CZ49
    Related
    ENSCJAP00000007522.1
    Conserved Domains (4) summary
    smart00389
    Location:614 → 671
    HOX; Homeodomain
    cd11585
    Location:60 → 155
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:477 → 556
    CUT; CUT domain
    pfam16557
    Location:162 → 232
    CUTL; CUT1-like DNA-binding domain of SATB
Nucleotide Protein
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