U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ATG13 autophagy related 13 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100385491, updated on 3-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
ATG13
Gene description
autophagy related 13
See related
Ensembl:ENSCJAG00000019823
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 11
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 11 NC_071452.1 (108392492..108462408)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 11 NC_048393.1 (109576197..109646094)

Chromosome 11 - NC_071452.1Genomic Context describing neighboring genes Neighboring gene autophagy and beclin 1 regulator 1 Neighboring gene teratocarcinoma-derived growth factor 1-like Neighboring gene harbinger transposase derived 1 Neighboring gene uncharacterized LOC128928986 Neighboring gene Rho GTPase activating protein 1 Neighboring gene zinc finger protein 408

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in piecemeal microautophagy of the nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Atg1/ULK1 kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
autophagy-related protein 13
Names
ATG13 autophagy related 13 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071452.1 Reference mCalJa1.2.pat.X

    Range
    108392492..108462408
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054240824.1 → XP_054096799.1  autophagy-related protein 13 isoform X1

    UniProtKB/TrEMBL
    F6SY25, U3DRN4

  2. XM_009008023.4 → XP_009006271.3  autophagy-related protein 13 isoform X1

    UniProtKB/TrEMBL
    F6SY25, U3DRN4

  3. XM_017978071.3 → XP_017833560.3  autophagy-related protein 13 isoform X3

  4. XM_054240828.1 → XP_054096803.1  autophagy-related protein 13 isoform X2

  5. XM_017978073.3 → XP_017833562.3  autophagy-related protein 13 isoform X4

    UniProtKB/TrEMBL
    F6YCQ9

  6. XM_017978077.3 → XP_017833566.1  autophagy-related protein 13 isoform X7

    UniProtKB/TrEMBL
    F6SY16, F7FBP8, U3CX99
    Related
    ENSCJAP00000036877.2
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  7. XM_035262540.2 → XP_035118431.1  autophagy-related protein 13 isoform X8

    UniProtKB/TrEMBL
    F6SY16, F7FBP8
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  8. XM_009008025.4 → XP_009006273.3  autophagy-related protein 13 isoform X1

    UniProtKB/TrEMBL
    F6SY25, U3DRN4

  9. XM_035262531.2 → XP_035118422.2  autophagy-related protein 13 isoform X3

  10. XM_035262537.2 → XP_035118428.1  autophagy-related protein 13 isoform X7

    UniProtKB/TrEMBL
    F6SY16, F7FBP8, U3CX99
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  11. XM_054240825.1 → XP_054096800.1  autophagy-related protein 13 isoform X1

    UniProtKB/TrEMBL
    F6SY25, U3DRN4

  12. XM_009008024.4 → XP_009006272.3  autophagy-related protein 13 isoform X1

    UniProtKB/TrEMBL
    F6SY25, U3DRN4

  13. XM_035262533.2 → XP_035118424.2  autophagy-related protein 13 isoform X4

    UniProtKB/TrEMBL
    F6YCQ9

  14. XM_035262536.2 → XP_035118427.1  autophagy-related protein 13 isoform X7

    UniProtKB/TrEMBL
    F6SY16, F7FBP8, U3CX99
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  15. XM_035262541.2 → XP_035118432.1  autophagy-related protein 13 isoform X8

    UniProtKB/TrEMBL
    F6SY16, F7FBP8
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  16. XM_009008027.4 → XP_009006275.3  autophagy-related protein 13 isoform X1

    UniProtKB/TrEMBL
    F6SY25, U3DRN4

  17. XM_035262532.2 → XP_035118423.2  autophagy-related protein 13 isoform X3

  18. XM_035262542.2 → XP_035118433.1  autophagy-related protein 13 isoform X8

    UniProtKB/TrEMBL
    F6SY16, F7FBP8
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  19. XM_054240822.1 → XP_054096797.1  autophagy-related protein 13 isoform X1

    UniProtKB/TrEMBL
    F6SY25, U3DRN4

  20. XM_002755219.6 → XP_002755265.4  autophagy-related protein 13 isoform X1

    UniProtKB/TrEMBL
    F6SY25, U3DRN4

  21. XM_035262530.2 → XP_035118421.2  autophagy-related protein 13 isoform X3

  22. XM_054240826.1 → XP_054096801.1  autophagy-related protein 13 isoform X2

  23. XM_054240830.1 → XP_054096805.1  autophagy-related protein 13 isoform X5

  24. XM_009008030.4 → XP_009006278.3  autophagy-related protein 13 isoform X4

    UniProtKB/TrEMBL
    F6YCQ9

  25. XM_035262535.2 → XP_035118426.2  autophagy-related protein 13 isoform X6

  26. XM_009008033.4 → XP_009006281.1  autophagy-related protein 13 isoform X7

    See identical proteins and their annotated locations for XP_009006281.1

    UniProtKB/TrEMBL
    F6SY16, F7FBP8, U3CX99
    Related
    ENSCJAP00000048062.1
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  27. XM_035262539.2 → XP_035118430.1  autophagy-related protein 13 isoform X8

    UniProtKB/TrEMBL
    F6SY16, F7FBP8
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  28. XM_009008026.4 → XP_009006274.3  autophagy-related protein 13 isoform X1

    UniProtKB/TrEMBL
    F6SY25, U3DRN4

  29. XM_054240829.1 → XP_054096804.1  autophagy-related protein 13 isoform X2

  30. XM_009008031.4 → XP_009006279.3  autophagy-related protein 13 isoform X4

    UniProtKB/TrEMBL
    F6YCQ9

  31. XM_035262538.2 → XP_035118429.1  autophagy-related protein 13 isoform X7

    UniProtKB/TrEMBL
    F6SY16, F7FBP8, U3CX99
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 192
    ATG13; Autophagy-related protein 13

  32. XM_054240823.1 → XP_054096798.1  autophagy-related protein 13 isoform X1

    UniProtKB/TrEMBL
    F6SY25, U3DRN4

  33. XM_054240831.1 → XP_054096806.1  autophagy-related protein 13 isoform X7

    UniProtKB/TrEMBL
    U3CX99

  34. XM_009008028.4 → XP_009006276.3  autophagy-related protein 13 isoform X1

    UniProtKB/TrEMBL
    F6SY25, U3DRN4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Miscellaneous