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NLGN3 neuroligin 3 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100385333, updated on 8-Mar-2024

Summary

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Gene symbol
NLGN3
Gene description
neuroligin 3
See related
Ensembl:ENSCJAG00000013566
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) X NC_071464.1 (65306096..65330802)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) X NC_048405.1 (66816887..66841610)

Chromosome X - NC_071464.1Genomic Context describing neighboring genes Neighboring gene interleukin 2 receptor subunit gamma Neighboring gene mediator complex subunit 12 Neighboring gene gap junction protein beta 1 Neighboring gene zinc finger MYM-type containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables neurexin family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in modulation of chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in postsynaptic membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in presynaptic membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic specialization membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuroligin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071464.1 Reference mCalJa1.2.pat.X

    Range
    65306096..65330802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035287804.2 → XP_035143695.1  neuroligin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8J8Y3T7, F6QUG2
    Conserved Domains (1) summary
    pfam00135
    Location:40 → 604
    COesterase; Carboxylesterase family

  2. XM_017968694.3 → XP_017824183.1  neuroligin-3 isoform X1

    UniProtKB/TrEMBL
    A0A8J8Y3T7, F7DYQ4
    Related
    ENSCJAP00000024974.1
    Conserved Domains (1) summary
    pfam00135
    Location:40 → 624
    COesterase; Carboxylesterase family

  3. XM_035287805.2 → XP_035143696.1  neuroligin-3 isoform X3

    UniProtKB/TrEMBL
    A0A8J8Y3T7, F6QIT4, U3D3A6
    Conserved Domains (1) summary
    pfam00135
    Location:40 → 584
    COesterase; Carboxylesterase family
Nucleotide Protein
Heading Accession and Version

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