SCRT2 scratch family transcriptional repressor 2 [Gallus gallus (chicken)] - Gene

Summary

Symbol: SCRT2provided by CGNC
Full Name: scratch family transcriptional repressor 2provided by CGNC
Primary source: CGNC:61458
See related: Ensembl:ENSGALG00010013799
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 20

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	20	NC_052551.1 (10259799..10264761)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	20	NC_052592.1 (10041417..10046380)

Chromosome 20 - NC_052551.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

the co-localization detected here suggests that Scrt2 and NeuroM may have opposing roles during definition of neural subtypes.
Title: The transcription factor chicken Scratch2 is expressed in a subset of early postmitotic neural progenitors.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: transcriptional repressor scratch 2

Names: scratch family zinc finger 2; scratch homolog 2, zinc finger protein; scratch2 zinc finger transcription factor; zinc finger transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001173522.2 → NP_001166993.2 transcriptional repressor scratch 2

Status: VALIDATED

Source sequence(s)

JAENSK010000328

UniProtKB/TrEMBL

D2DPB0, G9JWG4, R4GL11

Related

ENSGALP00010019585.1, ENSGALT00010033128.1

Conserved Domains (2) summary

COG5048
Location:185 → 265

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:187 → 207

ZF_C2H2; C2H2 Zn finger [structural motif]