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Fanci Fanconi anemia, complementation group I [ Rattus norvegicus (Norway rat) ]

Gene ID: 100360594, updated on 26-Sep-2017
Official Symbol
Fanciprovided by RGD
Official Full Name
Fanconi anemia, complementation group Iprovided by RGD
Primary source
RGD:2321863
See related
Ensembl:ENSRNOG00000016689
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Orthologs
Location:
1q31
Exon count:
38
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (141116565..141172997)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (142078658..142134772)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene abhydrolase domain containing 2 Neighboring gene retinaldehyde binding protein 1 Neighboring gene DNA polymerase gamma, catalytic subunit Neighboring gene transfer RNA arginine (anticodon UCG) Neighboring gene uncharacterized LOC102547943

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • DNA Repair, organism-specific biosystem (from REACTOME)
    DNA Repair, organism-specific biosystemcomputationally inferred pathway (not manually curated)
  • Fanconi Anemia Pathway, organism-specific biosystem (from REACTOME)
    Fanconi Anemia Pathway, organism-specific biosystemcomputationally inferred pathway (not manually curated)
  • Fanconi anemia pathway, organism-specific biosystem (from KEGG)
    Fanconi anemia pathway, organism-specific biosystemThe Fanconi anemia pathway is required for the efficient repair of damaged DNA, especially interstrand cross-links (ICLs). DNA ICL is directly recognized by FANCM and associated proteins, that recrui...
  • Fanconi anemia pathway, conserved biosystem (from KEGG)
    Fanconi anemia pathway, conserved biosystemThe Fanconi anemia pathway is required for the efficient repair of damaged DNA, especially interstrand cross-links (ICLs). DNA ICL is directly recognized by FANCM and associated proteins, that recrui...

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
DNA polymerase binding IBA
Inferred from Biological aspect of Ancestor
more info
 
DNA polymerase binding ISO
Inferred from Sequence Orthology
more info
PubMed 
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
DNA repair IEA
Inferred from Electronic Annotation
more info
 
biological_process ND
No biological Data available
more info
 
mitotic G2 DNA damage checkpoint IBA
Inferred from Biological aspect of Ancestor
more info
 
positive regulation of protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 
positive regulation of protein ubiquitination ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
cytosol IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
PubMed 
nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
Fanconi anemia group I protein

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    141116565..141172997
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017590455.1XP_017445944.1  Fanconi anemia group I protein isoform X1

    Related
    ENSRNOP00000043744.5, ENSRNOT00000050759.6

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    125390494..125446830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003753295.4XP_003753343.1  Fanconi anemia group I protein isoform X2

    Conserved Domains (2) summary
    cd11720
    Location:431291
    FANCI; Fanconi anemia I protein
    pfam14674
    Location:153
    FANCI_S1-cap; FANCI solenoid 1 cap
  2. XM_017588139.1XP_017443628.1  Fanconi anemia group I protein isoform X3

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