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Vstm1 V-set and transmembrane domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100360054, updated on 24-Jul-2025
Symbol
Vstm1provided by RGD
Full Name
V-set and transmembrane domain containing 1provided by RGD
Primary source
RGD:2322891
See related
AllianceGenome:RGD:2322891
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be involved in immune response-regulating signaling pathway. Predicted to be active in plasma membrane. Orthologous to human VSTM1 (V-set and transmembrane domain containing 1). [provided by Alliance of Genome Resources, Apr 2025]
Expression
Biased expression in Spleen (RPKM 5.6), Uterus (RPKM 2.0) and 6 other tissues See more
Orthologs
human all
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Location:
1q12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (74602391..74619474)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (65686989..65704073)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (64261888..64275421)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene T cell-interacting, activating receptor on myeloid cells 1 like 1 Neighboring gene T cell-interacting, activating receptor on myeloid cells 1 Neighboring gene calcium voltage-gated channel auxiliary subunit gamma 6 Neighboring gene calcium voltage-gated channel auxiliary subunit gamma 8 Neighboring gene microRNA 935

Go to nucleotide: Graphics FASTA GenBank

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Related articles in PubMed

  1. Identification of rat Vstm1 with conservative anti-inflammatory effect between rat and human homologs. Hu Y, et al. Genomics, 2024 Jan. PMID 38163574

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Identification of rat Vstm1 with conservative anti-inflammatory effect between rat and human homologs.
    Title: Identification of rat Vstm1 with conservative anti-inflammatory effect between rat and human homologs.
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in immune response-regulating signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
Preferred Names
V-set and transmembrane domain-containing protein 1
Names
VSTM1 protein-like

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    74602391..74619474
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039100438.2 → XP_038956366.1  V-set and transmembrane domain-containing protein 1 isoform X2

    Conserved Domains (2) summary
    cd00096
    Location:29 → 33
    Ig; Ig strand A [structural motif]
    cl11960
    Location:28 → 117
    Ig; Immunoglobulin domain

  2. XM_002728681.7 → XP_002728727.3  V-set and transmembrane domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_002728727.3

    UniProtKB/TrEMBL
    A0A8I5ZMJ1
    Conserved Domains (2) summary
    smart00410
    Location:35 → 108
    IG_like; Immunoglobulin like
    cl11960
    Location:27 → 118
    Ig; Immunoglobulin domain

RNA

  1. XR_010062962.1 RNA Sequence

  2. XR_005498367.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Chemical Information
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