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DEPDC5 DEP domain containing 5, GATOR1 subcomplex subunit [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100357606, updated on 17-Dec-2024
Gene symbol
DEPDC5
Gene description
DEP domain containing 5, GATOR1 subcomplex subunit
See related
Ensembl:ENSOCUG00000000594
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
all
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See DEPDC5 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
45
Annotation release Status Assembly Chr Location
RS_2024_11 current mOryCun1.1 (GCF_964237555.1) 21 NC_091452.1 (24838103..24991430)
RS_2023_02 previous assembly UM_NZW_1.0 (GCF_009806435.1) 21 NC_067394.1 (4634714..4784596)

Chromosome 21 - NC_091452.1Genomic Context describing neighboring genes Neighboring gene SFI1 centrin binding protein Neighboring gene phosphatidylserine decarboxylase Neighboring gene proline rich 14 like Neighboring gene uncharacterized LOC127484739 Neighboring gene uncharacterized LOC138847383 Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to amino acid starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of TORC1 signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of GATOR1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
GATOR1 complex protein DEPDC5

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RefSeqs of Annotated Genomes: GCF_964237555.1-RS_2024_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOryCun1.1

Genomic

  1. NC_091452.1 Reference mOryCun1.1

    Range
    24838103..24991430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051826702.2 → XP_051682662.2  GATOR1 complex protein DEPDC5 isoform X4

    UniProtKB/TrEMBL
    A0A5F9DTZ4

  2. XM_051826696.2 → XP_051682656.2  GATOR1 complex protein DEPDC5 isoform X1

    UniProtKB/TrEMBL
    A0A5F9DT51

  3. XM_051826701.2 → XP_051682661.2  GATOR1 complex protein DEPDC5 isoform X3

    UniProtKB/TrEMBL
    A0A5F9DTZ4

  4. XM_051826700.2 → XP_051682660.2  GATOR1 complex protein DEPDC5 isoform X2

    UniProtKB/TrEMBL
    A0A5F9DT51

  5. XM_051826703.2 → XP_051682663.2  GATOR1 complex protein DEPDC5 isoform X5

    UniProtKB/TrEMBL
    A0A5F9DT51

  6. XM_051826704.2 → XP_051682664.2  GATOR1 complex protein DEPDC5 isoform X6

    UniProtKB/TrEMBL
    A0A5F9CVF7

  7. XM_051826707.2 → XP_051682667.2  GATOR1 complex protein DEPDC5 isoform X7

  8. XM_051826709.2 → XP_051682669.1  GATOR1 complex protein DEPDC5 isoform X8

  9. XM_051826697.2 → XP_051682657.2  GATOR1 complex protein DEPDC5 isoform X1

    UniProtKB/TrEMBL
    A0A5F9DT51

  10. XM_051826698.2 → XP_051682658.2  GATOR1 complex protein DEPDC5 isoform X1

    UniProtKB/TrEMBL
    A0A5F9DT51

RNA

  1. XR_011385158.1 RNA Sequence

  2. XR_011385159.1 RNA Sequence

  3. XR_011385160.1 RNA Sequence

  4. XR_007911935.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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