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TDG thymine DNA glycosylase [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100355930, updated on 3-Dec-2024

Summary

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Gene symbol
TDG
Gene description
thymine DNA glycosylase
See related
Ensembl:ENSOCUG00000016313
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Genomic context

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See TDG in Genome Data Viewer
Location:
chromosome: 11
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_11 current mOryCun1.1 (GCF_964237555.1) 11 NC_091442.1 (106798750..106818710)
RS_2023_02 previous assembly UM_NZW_1.0 (GCF_009806435.1) 4 NC_067377.1 (90631248..90651113)

Chromosome 11 - NC_091442.1Genomic Context describing neighboring genes Neighboring gene heat shock protein 90 beta family member 1 Neighboring gene ubiquinol-cytochrome c reductase complex assembly factor 6 Neighboring gene glycosyltransferase 8 domain containing 2 Neighboring gene host cell factor C2 Neighboring gene 26S proteasome non-ATPase regulatory subunit 10 pseudogene Neighboring gene nuclear transcription factor Y subunit beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyrimidine-specific mismatch base pair DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables uracil DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair, AP site formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
G/T mismatch-specific thymine DNA glycosylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_964237555.1-RS_2024_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOryCun1.1

Genomic

  1. NC_091442.1 Reference mOryCun1.1

    Range
    106798750..106818710
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051845841.2 → XP_051701801.1  G/T mismatch-specific thymine DNA glycosylase

    UniProtKB/TrEMBL
    A0A5F9D5X7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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