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CLTCL1 clathrin heavy chain like 1 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100351366, updated on 3-Apr-2024

Summary

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Gene symbol
CLTCL1
Gene description
clathrin heavy chain like 1
See related
Ensembl:ENSOCUG00000001254
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human all
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Genomic context

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Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) Unplaced Scaffold NW_026259248.1 (766180..875960, complement)

NW_026259248.1Genomic Context describing neighboring genes Neighboring gene goosecoid homeobox 2 Neighboring gene solute carrier family 25 member 1 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene protein HIRA Neighboring gene mitochondrial ribosomal protein L40

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026259248 Unplaced Scaffold Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin light chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in receptor-mediated endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of clathrin coat of coated pit IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of clathrin coat of trans-Golgi network vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of clathrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in clathrin-coated endocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular exosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
clathrin heavy chain 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NW_026259248.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    766180..875960 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008250238.2 → XP_008248460.1  clathrin heavy chain 2 isoform X1

    UniProtKB/TrEMBL
    G1SF26
    Related
    ENSOCUP00000001087.3
    Conserved Domains (5) summary
    smart00299
    Location:1274 → 1416
    CLH; Clathrin heavy chain repeat homology
    pfam00637
    Location:983 → 1119
    Clathrin; Region in Clathrin and VPS
    pfam01394
    Location:296 → 330
    Clathrin_propel; Clathrin propeller repeat
    pfam09268
    Location:331 → 353
    Clathrin-link; Clathrin, heavy-chain linker
    pfam13838
    Location:364 → 421
    Clathrin_H_link; Clathrin-H-link

  2. XM_051837308.1 → XP_051693268.1  clathrin heavy chain 2 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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