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TAF4B TATA-box binding protein associated factor 4b [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100349838, updated on 17-Dec-2024

Summary

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Gene symbol
TAF4B
Gene description
TATA-box binding protein associated factor 4b
See related
Ensembl:ENSOCUG00000005480
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Genomic context

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See TAF4B in Genome Data Viewer
Location:
chromosome: 10
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_11 current mOryCun1.1 (GCF_964237555.1) 10 NC_091441.1 (51367659..51503468, complement)
RS_2023_02 previous assembly UM_NZW_1.0 (GCF_009806435.1) 9 NC_067382.1 (48560450..48696115, complement)

Chromosome 10 - NC_091441.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC138844036 Neighboring gene potassium channel tetramerization domain containing 1 Neighboring gene uncharacterized LOC127492395 Neighboring gene small ribosomal subunit protein uS14-like Neighboring gene cytochrome c oxidase subunit 7A2, mitochondrial pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 4B
Names
TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_964237555.1-RS_2024_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOryCun1.1

Genomic

  1. NC_091441.1 Reference mOryCun1.1

    Range
    51367659..51503468 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008261165.4 → XP_008259387.1  transcription initiation factor TFIID subunit 4B isoform X2

    UniProtKB/TrEMBL
    A0A5F9CUQ9, G1U7L5
    Related
    ENSOCUP00000037493.1
    Conserved Domains (2) summary
    pfam05236
    Location:574 → 815
    TAF4; Transcription initiation factor TFIID component TAF4 family
    pfam07531
    Location:220 → 308
    TAFH; NHR1 homology to TAF

  2. XM_002713611.5 → XP_002713657.2  transcription initiation factor TFIID subunit 4B isoform X1

    UniProtKB/TrEMBL
    G1U7L5
Nucleotide Protein
Heading Accession and Version

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