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PTPN18 protein tyrosine phosphatase non-receptor type 18 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100346705, updated on 2-Dec-2024
Gene symbol
PTPN18
Gene description
protein tyrosine phosphatase non-receptor type 18
See related
Ensembl:ENSOCUG00000010571
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
all
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See PTPN18 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_11 current mOryCun1.1 (GCF_964237555.1) 3 NC_091434.1 (120802006..120816215, complement)
RS_2023_02 previous assembly UM_NZW_1.0 (GCF_009806435.1) 7 NC_067380.1 (113452875..113467071, complement)

Chromosome 3 - NC_091434.1Genomic Context describing neighboring genes Neighboring gene serine protease 40 Neighboring gene cryptic, EGF-CFC family member 1B Neighboring gene IMP U3 small nucleolar ribonucleoprotein 4 Neighboring gene vacuolar ATPase assembly factor VMA22

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables non-membrane spanning protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-tyrosine dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
tyrosine-protein phosphatase non-receptor type 18
Names
protein tyrosine phosphatase, non-receptor type 18 (brain-derived)

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RefSeqs of Annotated Genomes: GCF_964237555.1-RS_2024_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOryCun1.1

Genomic

  1. NC_091434.1 Reference mOryCun1.1

    Range
    120802006..120816215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002712283.5 → XP_002712329.1  tyrosine-protein phosphatase non-receptor type 18

    UniProtKB/TrEMBL
    G1SZK7
    Conserved Domains (2) summary
    cd00047
    Location:58 → 290
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    pfam00102
    Location:56 → 290
    Y_phosphatase; Protein-tyrosine phosphatase

RNA

  1. XR_011387616.1 RNA Sequence

  2. XR_011387615.1 RNA Sequence

  3. XR_001793551.3 RNA Sequence

  4. XR_001793554.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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