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HBP1 HMG-box transcription factor 1 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100344904, updated on 3-Dec-2024
Gene symbol
HBP1
Gene description
HMG-box transcription factor 1
See related
Ensembl:ENSOCUG00000012758
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_11 current mOryCun1.1 (GCF_964237555.1) 3 NC_091434.1 (137027333..137060541, complement)
RS_2023_02 previous assembly UM_NZW_1.0 (GCF_009806435.1) 7 NC_067380.1 (129773447..129806628, complement)

Chromosome 3 - NC_091434.1Genomic Context describing neighboring genes Neighboring gene nuclear speckle splicing regulatory protein 1 pseudogene Neighboring gene component of oligomeric golgi complex 5 Neighboring gene G protein-coupled receptor 22 Neighboring gene uncharacterized LOC138849034 Neighboring gene protein kinase cAMP-dependent type II regulatory subunit beta Neighboring gene uncharacterized LOC103348698

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
HMG box-containing protein 1

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RefSeqs of Annotated Genomes: GCF_964237555.1-RS_2024_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOryCun1.1

Genomic

  1. NC_091434.1 Reference mOryCun1.1

    Range
    137027333..137060541 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002712037.5 → XP_002712083.1  HMG box-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A5F9CD82, G1T402
    Related
    ENSOCUP00000010973.3
    Conserved Domains (2) summary
    smart00536
    Location:219 → 345
    AXH; domain in Ataxins and HMG containing proteins
    cd01388
    Location:438 → 509
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  2. XM_051849691.2 → XP_051705651.1  HMG box-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A5F9CD82
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials