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MBD1 methyl-CpG binding domain protein 1 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100340239, updated on 20-Feb-2025
Gene symbol
MBD1
Gene description
methyl-CpG binding domain protein 1
See related
Ensembl:ENSOCUG00000006554
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
human mouse all
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See MBD1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_11 current mOryCun1.1 (GCF_964237555.1) 10 NC_091441.1 (27832814..27847714)
RS_2023_02 previous assembly UM_NZW_1.0 (GCF_009806435.1) 9 NC_067382.1 (25142434..25155882)

Chromosome 10 - NC_091441.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC138843944 Neighboring gene CXXC finger protein 1 Neighboring gene cilia and flagella associated protein 53 Neighboring gene myosin VB Neighboring gene U6 spliceosomal RNA

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Set1C/COMPASS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
methyl-CpG-binding domain protein 1

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RefSeqs of Annotated Genomes: GCF_964237555.1-RS_2024_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOryCun1.1

Genomic

  1. NC_091441.1 Reference mOryCun1.1

    Range
    27832814..27847714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_070049898.1 → XP_069905999.1  methyl-CpG-binding domain protein 1 isoform X19

    UniProtKB/TrEMBL
    A0A5F9DUZ5

  2. XM_070049889.1 → XP_069905990.1  methyl-CpG-binding domain protein 1 isoform X15

    UniProtKB/TrEMBL
    A0A5F9DUZ5

  3. XM_070049899.1 → XP_069906000.1  methyl-CpG-binding domain protein 1 isoform X20

    UniProtKB/TrEMBL
    A0A5F9CI74

  4. XM_070049897.1 → XP_069905998.1  methyl-CpG-binding domain protein 1 isoform X19

    UniProtKB/TrEMBL
    A0A5F9DUZ5

  5. XM_017344173.3 → XP_017199662.1  methyl-CpG-binding domain protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A5F9DUZ5

  6. XM_017344174.3 → XP_017199663.1  methyl-CpG-binding domain protein 1 isoform X19

    UniProtKB/TrEMBL
    A0A5F9DUZ5

  7. XM_070049895.1 → XP_069905996.1  methyl-CpG-binding domain protein 1 isoform X19

    UniProtKB/TrEMBL
    A0A5F9DUZ5

  8. XM_070049881.1 → XP_069905982.1  methyl-CpG-binding domain protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A5F9C401, G1TSF5

  9. XM_070049878.1 → XP_069905979.1  methyl-CpG-binding domain protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A5F9C401

  10. XM_070049882.1 → XP_069905983.1  methyl-CpG-binding domain protein 1 isoform X11

    UniProtKB/TrEMBL
    A0A5F9C401

  11. XM_070049879.1 → XP_069905980.1  methyl-CpG-binding domain protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A5F9C401

  12. XM_070049886.1 → XP_069905987.1  methyl-CpG-binding domain protein 1 isoform X12

    UniProtKB/TrEMBL
    A0A5F9C401

  13. XM_070049892.1 → XP_069905993.1  methyl-CpG-binding domain protein 1 isoform X17

    UniProtKB/TrEMBL
    A0A5F9C401, A0A5F9DFR4

  14. XM_070049887.1 → XP_069905988.1  methyl-CpG-binding domain protein 1 isoform X13

    UniProtKB/TrEMBL
    A0A5F9C401

  15. XM_070049893.1 → XP_069905994.1  methyl-CpG-binding domain protein 1 isoform X18

    UniProtKB/TrEMBL
    A0A5F9CR33, A0A5F9DUZ5

  16. XM_070049888.1 → XP_069905989.1  methyl-CpG-binding domain protein 1 isoform X14

    UniProtKB/TrEMBL
    A0A5F9DUZ5

  17. XM_070049901.1 → XP_069906002.1  methyl-CpG-binding domain protein 1 isoform X22

    UniProtKB/TrEMBL
    A0A5F9CI74

  18. XM_070049900.1 → XP_069906001.1  methyl-CpG-binding domain protein 1 isoform X21

    UniProtKB/TrEMBL
    A0A5F9CI74

  19. XM_008261293.4 → XP_008259515.1  methyl-CpG-binding domain protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A5F9C401
    Conserved Domains (2) summary
    smart00391
    Location:3 → 76
    MBD; Methyl-CpG binding domain
    pfam02008
    Location:356 → 402
    zf-CXXC; CXXC zinc finger domain

  20. XM_051851215.2 → XP_051707175.1  methyl-CpG-binding domain protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A5F9C401

  21. XM_008261294.4 → XP_008259516.1  methyl-CpG-binding domain protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A5F9C401
    Conserved Domains (2) summary
    smart00391
    Location:3 → 76
    MBD; Methyl-CpG binding domain
    pfam02008
    Location:333 → 379
    zf-CXXC; CXXC zinc finger domain

  22. XM_070049874.1 → XP_069905975.1  methyl-CpG-binding domain protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A5F9C401

  23. XM_008261296.4 → XP_008259518.1  methyl-CpG-binding domain protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A5F9DUZ5
    Conserved Domains (2) summary
    smart00391
    Location:3 → 76
    MBD; Methyl-CpG binding domain
    pfam02008
    Location:331 → 377
    zf-CXXC; CXXC zinc finger domain

  24. XM_070049880.1 → XP_069905981.1  methyl-CpG-binding domain protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A5F9CI74

  25. XM_008261300.4 → XP_008259522.1  methyl-CpG-binding domain protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A5F9C401, G1TSF5
    Related
    ENSOCUP00000019971.3
    Conserved Domains (2) summary
    smart00391
    Location:3 → 76
    MBD; Methyl-CpG binding domain
    pfam02008
    Location:356 → 402
    zf-CXXC; CXXC zinc finger domain

  26. XM_070049883.1 → XP_069905984.1  methyl-CpG-binding domain protein 1 isoform X11

    UniProtKB/TrEMBL
    A0A5F9C401

  27. XM_051851222.2 → XP_051707182.1  methyl-CpG-binding domain protein 1 isoform X16

    UniProtKB/TrEMBL
    A0A5F9C401

  28. XM_070049890.1 → XP_069905991.1  methyl-CpG-binding domain protein 1 isoform X16

    UniProtKB/TrEMBL
    A0A5F9C401

  29. XM_070049891.1 → XP_069905992.1  methyl-CpG-binding domain protein 1 isoform X17

    UniProtKB/TrEMBL
    A0A5F9C401, A0A5F9DFR4

  30. XM_002713532.5 → XP_002713578.1  methyl-CpG-binding domain protein 1 isoform X18

    UniProtKB/TrEMBL
    A0A5F9CR33, A0A5F9DUZ5
    Related
    ENSOCUP00000036206.1
    Conserved Domains (2) summary
    smart00391
    Location:3 → 76
    MBD; Methyl-CpG binding domain
    pfam02008
    Location:331 → 377
    zf-CXXC; CXXC zinc finger domain

  31. XM_051851223.2 → XP_051707183.1  methyl-CpG-binding domain protein 1 isoform X22

    UniProtKB/TrEMBL
    A0A5F9CI74

  32. XM_008261302.4 → XP_008259524.1  methyl-CpG-binding domain protein 1 isoform X23

    Conserved Domains (1) summary
    pfam02008
    Location:225 → 271
    zf-CXXC; CXXC zinc finger domain

  33. XM_070049885.1 → XP_069905986.1  methyl-CpG-binding domain protein 1 isoform X11

    UniProtKB/TrEMBL
    A0A5F9C401

  34. XM_070049894.1 → XP_069905995.1  methyl-CpG-binding domain protein 1 isoform X18

    UniProtKB/TrEMBL
    A0A5F9CR33, A0A5F9DUZ5

  35. XM_070049873.1 → XP_069905974.1  methyl-CpG-binding domain protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A5F9C401

  36. XM_070049876.1 → XP_069905977.1  methyl-CpG-binding domain protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A5F9DUZ5

  37. XM_070049877.1 → XP_069905978.1  methyl-CpG-binding domain protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A5F9DUZ5

  38. XM_070049902.1 → XP_069906003.1  methyl-CpG-binding domain protein 1 isoform X24

  39. XM_070049884.1 → XP_069905985.1  methyl-CpG-binding domain protein 1 isoform X11

    UniProtKB/TrEMBL
    A0A5F9C401

  40. XM_070049896.1 → XP_069905997.1  methyl-CpG-binding domain protein 1 isoform X19

    UniProtKB/TrEMBL
    A0A5F9DUZ5

RNA

  1. XR_011379175.1 RNA Sequence

  2. XR_011379170.1 RNA Sequence

  3. XR_011379171.1 RNA Sequence

  4. XR_011379172.1 RNA Sequence

  5. XR_011379173.1 RNA Sequence

  6. XR_011379167.1 RNA Sequence

  7. XR_011379168.1 RNA Sequence

  8. XR_011379169.1 RNA Sequence

  9. XR_011379174.1 RNA Sequence

  10. XR_011379176.1 RNA Sequence

Nucleotide Protein
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