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BATF basic leucine zipper ATF-like transcription factor [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100338089, updated on 2-Dec-2024
Gene symbol
BATF
Gene description
basic leucine zipper ATF-like transcription factor
See related
Ensembl:ENSOCUG00000026625
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
all
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See BATF in Genome Data Viewer
Location:
chromosome: 20
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_11 current mOryCun1.1 (GCF_964237555.1) 20 NC_091451.1 (21529305..21550300)
RS_2023_02 previous assembly UM_NZW_1.0 (GCF_009806435.1) 20 NC_067393.1 (29245911..29266854, complement)

Chromosome 20 - NC_091451.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100339933 Neighboring gene Jun dimerization protein 2 Neighboring gene uncharacterized LOC127484624 Neighboring gene uncharacterized LOC127484603 Neighboring gene FLVCR choline and putative heme transporter 2 Neighboring gene ergosterol biosynthesis 28 homolog Neighboring gene tubulin tyrosine ligase like 5

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
basic leucine zipper transcriptional factor ATF-like
Names
basic leucine zipper transcription factor, ATF-like

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RefSeqs of Annotated Genomes: GCF_964237555.1-RS_2024_11

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOryCun1.1

Genomic

  1. NC_091451.1 Reference mOryCun1.1

    Range
    21529305..21550300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002719638.5 → XP_002719684.1  basic leucine zipper transcriptional factor ATF-like isoform X2

    UniProtKB/TrEMBL
    G1TV09
    Related
    ENSOCUP00000020888.1
    Conserved Domains (1) summary
    cd14701
    Location:26 → 83
    bZIP_BATF; Basic leucine zipper (bZIP) domain of BATF proteins: a DNA-binding and dimerization domain

  2. XM_017349492.3 → XP_017204981.1  basic leucine zipper transcriptional factor ATF-like isoform X3

  3. XM_070065647.1 → XP_069921748.1  basic leucine zipper transcriptional factor ATF-like isoform X1

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials