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fut6.2 fucosyltransferase 6 gene 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100335051, updated on 9-Dec-2024

Summary

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Official Symbol
fut6.2provided by Xenbase
Official Full Name
fucosyltransferase 6 gene 2provided by Xenbase
Primary source
Xenbase:XB-GENE-5772160
See related
Ensembl:ENSXETG00000027089 AllianceGenome:Xenbase:XB-GENE-5772160
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
fut4
Summary
Predicted to enable fucosyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi cisterna membrane. Orthologous to human FUT3 (fucosyltransferase 3 (Lewis blood group)); FUT5 (fucosyltransferase 5); and FUT6 (fucosyltransferase 6). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See fut6.2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (34074017..34080738, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (39184754..39186028, complement)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene synaptotagmin-1 Neighboring gene zinc finger protein 81 Neighboring gene uncharacterized LOC116410494 Neighboring gene fucosyltransferase 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC147054

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables alpha-(1->3)-fucosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in fucosylation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
fucosyltransferase 6 gene 2
Names
alpha 1,3/4 fucosyltransferase
fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001171928.1 → NP_001165399.1  fucosyltransferase 6 gene 2

    See identical proteins and their annotated locations for NP_001165399.1

    Status: PROVISIONAL

    Source sequence(s)
    BC118875
    UniProtKB/TrEMBL
    F6SLM0, L7N2W1, Q0VFC9, Q6WNG2
    Conserved Domains (2) summary
    pfam00852
    Location:176 → 345
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:52 → 160
    Glyco_tran_10_N; Fucosyltransferase, N-terminal

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    34074017..34080738 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031899926.1 → XP_031755786.1  fucosyltransferase 6 gene 2 isoform X1

    UniProtKB/TrEMBL
    F6SLM0, L7N2W1, Q0VFC9, Q6WNG2
    Related
    ENSXETP00000033136.3, ENSXETT00000033136.5
    Conserved Domains (2) summary
    pfam00852
    Location:176 → 345
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:52 → 160
    Glyco_tran_10_N; Fucosyltransferase, N-terminal
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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