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si:ch73-343l4.8 si:ch73-343l4.8 [ Danio rerio (zebrafish) ]

Gene ID: 100320176, updated on 27-Mar-2024

Summary

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Official Symbol
si:ch73-343l4.8provided by ZNC
Official Full Name
si:ch73-343l4.8provided by ZNC
Primary source
ZFIN:ZDB-GENE-090313-159
See related
Ensembl:ENSDARG00000077975 AllianceGenome:ZFIN:ZDB-GENE-090313-159
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable carbohydrate binding activity. Predicted to be involved in immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to human CLEC4E (C-type lectin domain family 4 member E). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (55890821..55896332, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (55213789..55218681, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b Neighboring gene anti-silencing function 1Bb histone chaperone Neighboring gene uncharacterized LOC103909412 Neighboring gene CD209 antigen

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables fucose binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables mannose binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in biological process involved in interspecies interaction between organisms IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
C-type lectin domain family 4 member E

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    55890821..55896332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002660579.5 → XP_002660625.1  C-type lectin domain family 4 member E

    UniProtKB/TrEMBL
    A0A8M1RJW6, B8JM30
    Related
    ENSDARP00000121395.1, ENSDART00000147516.2
    Conserved Domains (1) summary
    cd03590
    Location:48 → 170
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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