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CPT1 neryl diphosphate synthase 1 [ Solanum lycopersicum (tomato) ]

Gene ID: 100316884, updated on 19-Feb-2025
Gene symbol
CPT1
Gene description
neryl diphosphate synthase 1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
NDPS1; SlCPT1
Annotation information
Annotation category: suggests misassembly
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See CPT1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 8 NC_090807.1 (1307653..1335968)
103 previous assembly SL3.0 (GCF_000188115.4) 8 NC_015445.3 (530773..557531)

Chromosome 8 - NC_090807.1Genomic Context describing neighboring genes Neighboring gene dimethylallylcistransferase CPT1, chloroplastic-like Neighboring gene beta-phellandrene synthase (neryl-diphosphate-cyclizing), chloroplastic-like Neighboring gene uncharacterized LOC138337676 Neighboring gene terpene synthase Neighboring gene uncharacterized LOC138337656 Neighboring gene microRNA MIR168a Neighboring gene terpene synthase

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Monoterpenes in the glandular trichomes of tomato are synthesized from a neryl diphosphate precursor rather than geranyl diphosphate. Schilmiller AL, et al. Proc Natl Acad Sci U S A, 2009 Jun 30. PMID 19487664, Free PMC Article
  2. Evolution of a complex locus for terpene biosynthesis in solanum. Matsuba Y, et al. Plant Cell, 2013 Jun. PMID 23757397, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in plastid membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in polyprenol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to cold IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast stroma IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
dimethylallylcistransferase CPT1, chloroplastic
Names
Neryl diphosphate synthase, chloroplastic
cis-prenyl transferase 1
cis-prenyltransferase 1
dimethylallylcistransferase, chloroplastic
neryl-diphosphate synthase
NP_001234633.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247704.1 → NP_001234633.1  dimethylallylcistransferase CPT1, chloroplastic

    See identical proteins and their annotated locations for NP_001234633.1

    Status: PROVISIONAL

    Source sequence(s)
    FJ797956
    UniProtKB/Swiss-Prot
    C1K5M2, R9R6P8
    Conserved Domains (1) summary
    pfam01255
    Location:84 → 299
    Prenyltransf; Putative undecaprenyl diphosphate synthase

RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090807.1 Reference SLM_r2.1 Primary Assembly

    Range
    1307653..1335968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
C1K5M2.1 GenPept UniProtKB/Swiss-Prot:C1K5M2

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Molecular Biology Databases