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SLC25A5-AS1 SLC25A5 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100303728, updated on 13-May-2022

Summary

Official Symbol
SLC25A5-AS1provided by HGNC
Official Full Name
SLC25A5 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:43438
See related
Ensembl:ENSG00000224281 AllianceGenome:HGNC:43438
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in kidney (RPKM 1.4), thyroid (RPKM 1.4) and 25 other tissues See more
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Genomic context

See SLC25A5-AS1 in Genome Data Viewer
Location:
Xq24
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (119466033..119469120, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (117843733..117846820, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (118599996..118603083, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 43 Neighboring gene RNA, 7SL, cytoplasmic 118, pseudogene Neighboring gene RNY3 pseudogene 16 Neighboring gene solute carrier family 25 member 5 Neighboring gene Sharpr-MPRA regulatory region 9216 Neighboring gene STING1 ER exit protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • SLC25A5 antisense RNA 1 (non-protein coding)

Clone Names

  • FLJ34775, FLJ36961

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028443.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AI380428, AI471629, AK092094, BC050320, BM715000
    Related
    ENST00000395539.2
  2. NR_134914.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice junction compared to variant 1.
    Source sequence(s)
    AC004000, BC028211
    Related
    ENST00000445759.1
  3. NR_134915.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice junction compared to variant 1.
    Source sequence(s)
    AC004000, AK094280, BM676701
    Related
    ENST00000446986.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    119466033..119469120 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    117843733..117846820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)