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HAVCR1 hepatitis A virus cellular receptor 1 [ Sus scrofa (pig) ]

Gene ID: 100303721, updated on 2-Oct-2018

Summary

Gene symbol
HAVCR1
Gene description
hepatitis A virus cellular receptor 1
See related
Ensembl:ENSSSCG00000017061
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
Expression
Biased expression in ovary (RPKM 3.7) and spleen (RPKM 0.3) See more
Orthologs

Genomic context

See HAVCR1 in Genome Data Viewer
Location:
16; 16
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 16 NC_010458.4 (66162318..66208868)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 16 NC_010458.3 (71949487..71963277, complement)

Chromosome 16 - NC_010458.4Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 71 member B Neighboring gene hepatitis A virus cellular receptor 2 Neighboring gene mediator complex subunit 7 Neighboring gene uncharacterized LOC110257242 Neighboring gene T cell immunoglobulin and mucin domain containing 4 Neighboring gene sarcoglycan delta

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Markers

Homology

General protein information

Preferred Names
hepatitis A virus cellular receptor 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164736.1NP_001158208.1  hepatitis A virus cellular receptor 1 precursor

    See identical proteins and their annotated locations for NP_001158208.1

    Status: PROVISIONAL

    Source sequence(s)
    GQ421749
    UniProtKB/TrEMBL
    C8CLK5
    Related
    ENSSSCP00000018076.3, ENSSSCT00000018576.3
    Conserved Domains (2) summary
    smart00410
    Location:24124
    IG_like; Immunoglobulin like
    pfam07686
    Location:22107
    V-set; Immunoglobulin V-set domain

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010458.4 Reference Sscrofa11.1 Primary Assembly

    Range
    66162318..66208868
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021076535.1XP_020932194.1  hepatitis A virus cellular receptor 1 isoform X1

    Conserved Domains (1) summary
    pfam07686
    Location:22107
    V-set; Immunoglobulin V-set domain
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