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LOC100301922 PI-phospholipase C PLC2 [ Solanum lycopersicum (tomato) ]

Gene ID: 100301922, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100301922
Gene description
PI-phospholipase C PLC2
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 6 NC_015443.3 (35260403..35267550, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 6 NC_015443.2 (35169714..35176673, complement)

Chromosome 6 - NC_015443.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104647971 Neighboring gene uncharacterized LOC109120429 Neighboring gene protein EIN4 Neighboring gene PI-phospholipase C PLC5 Neighboring gene peptidyl-prolyl cis-trans isomerase B Neighboring gene protein EARLY FLOWERING 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Silencing of the tomato phosphatidylinositol-phospholipase C2 (SlPLC2) reduces plant susceptibility to Botrytis cinerea. Gonorazky G, et al. Mol Plant Pathol, 2016 Dec. PMID 26868615, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SlPLC2 participates in plant susceptibility to B. cinerea.
    Title: Silencing of the tomato phosphatidylinositol-phospholipase C2 (SlPLC2) reduces plant susceptibility to Botrytis cinerea.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol phospholipase C activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PI-phospholipase C PLC2
Names
putative phospholipase C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247268.1 → NP_001234197.1  PI-phospholipase C PLC2

    See identical proteins and their annotated locations for NP_001234197.1

    Status: PROVISIONAL

    Source sequence(s)
    EU099599
    UniProtKB/TrEMBL
    B6C9K4, Q5GA63
    Conserved Domains (4) summary
    cd00275
    Location:431 → 561
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08599
    Location:104 → 400
    PI-PLCc_plant; Catalytic domain of plant phosphatidylinositide-specific phospholipases C
    PLN02222
    Location:1 → 560
    PLN02222; phosphoinositide phospholipase C 2
    pfam09279
    Location:26 → 104
    EF-hand_like; Phosphoinositide-specific phospholipase C, efhand-like

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015443.3 Reference SL3.0 Primary Assembly

    Range
    35260403..35267550 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026031287.1 → XP_025887072.1  PI-phospholipase C PLC2 isoform X1

    UniProtKB/TrEMBL
    Q5GA63
    Conserved Domains (1) summary
    cl27705
    Location:1 → 559
    PI-PLC-Y; Phosphatidylinositol-specific phospholipase C, Y domain
Nucleotide Protein
Heading Accession and Version

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