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RNF213-AS1 RNF213 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100294362, updated on 13-May-2022

Summary

Official Symbol
RNF213-AS1provided by HGNC
Official Full Name
RNF213 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:54402
See related
Ensembl:ENSG00000263069 AllianceGenome:HGNC:54402
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in spleen (RPKM 2.6), appendix (RPKM 2.5) and 25 other tissues See more
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Genomic context

See RNF213-AS1 in Genome Data Viewer
Location:
17q25.3
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (80351830..80415168, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (81254060..81317022, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (78325630..78388968, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene SLC26A11-RNF213 intergenic CAGE-defined mid-level expression enhancer Neighboring gene CRISPRi-validated cis-regulatory element chr17.5742 Neighboring gene ring finger protein 213 Neighboring gene microRNA 4730 Neighboring gene endonuclease V Neighboring gene neuronal pentraxin 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide association study identifies RNF213 as the first Moyamoya disease gene.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_029376.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC120024, AC124319
    Related
    ENST00000575034.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    80351830..80415168 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    81254060..81317022 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)