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ZNF605 zinc finger protein 605 [ Homo sapiens (human) ]

Gene ID: 100289635, updated on 7-Sep-2023

Summary

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Official Symbol
ZNF605provided by HGNC
Official Full Name
zinc finger protein 605provided by HGNC
Primary source
HGNC:HGNC:28068
See related
Ensembl:ENSG00000196458 AllianceGenome:HGNC:28068
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Note: ZNF605 was originally represented by geneID:90462, and is located at chromosome 12q24.33. For NCBI Build 36.3, geneID:90462 was misplaced on the unplaced chr 12 contig NT_167217.1, and geneID:100289635 was created to represent the chr 12 location. This error was fixed in September 2009 by renaming geneID:100289635 as ZNF605. [13 Feb 2013]
Expression
Ubiquitous expression in thyroid (RPKM 5.2), ovary (RPKM 3.1) and 25 other tissues See more
Orthologs
mouse all
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Genomic context

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See ZNF605 in Genome Data Viewer
Location:
12q24.33
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (132918306..132956306, complement)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (132969080..133013678, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (133494892..133532892, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) pseudogene Neighboring gene uncharacterized LOC124903065 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:133531610-133532440 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:133532441-133533269 Neighboring gene uncharacterized LOC124903064 Neighboring gene NANOGNB pseudogene 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:133563299-133563798 Neighboring gene RNA, U4atac small nuclear 12, pseudogene Neighboring gene zinc finger protein 26

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The full-ORF clone resource of the German cDNA Consortium. Bechtel S, et al. BMC Genomics, 2007 Oct 31. PMID 17974005, Free PMC Article
  2. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
  3. A directed protein interaction network for investigating intracellular signal transduction. Vinayagam A, et al. Sci Signal, 2011 Sep 6. PMID 21900206
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Potential readthrough

Included gene: CHFR

Homology

Clone Names

  • FLJ14967, FLJ16520, DKFZp686B222, DKFZp451B1818

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 605

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164715.2 → NP_001158187.1  zinc finger protein 605 isoform 2

    See identical proteins and their annotated locations for NP_001158187.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon in the 5' UTR and includes an alternate in-frame exon in the 5' coding region, compared to variant 1. The resulting isoform (2) includes an alternate segment, compared to isoform 1.
    Source sequence(s)
    AC127070, AK122878, BF476024
    Consensus CDS
    CCDS53850.1
    UniProtKB/Swiss-Prot
    Q86T29
    Related
    ENSP00000376135.3, ENST00000392321.3
    Conserved Domains (6) summary
    smart00349
    Location:7 → 65
    KRAB; krueppel associated box
    COG5048
    Location:199 → 603
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:230 → 250
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:620 → 642
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:7 → 45
    KRAB; KRAB box
    pfam13465
    Location:551 → 575
    zf-H2C2_2; Zinc-finger double domain

  2. NM_183238.4 → NP_899061.1  zinc finger protein 605 isoform 1

    See identical proteins and their annotated locations for NP_899061.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript but encodes the shorter isoform (1).
    Source sequence(s)
    AC073911, AC127070, AL832191, BF476024
    Consensus CDS
    CCDS31938.1
    UniProtKB/Swiss-Prot
    B3KVG4, D3DXJ0, Q86T29, Q86T91
    Related
    ENSP00000353314.3, ENST00000360187.9
    Conserved Domains (6) summary
    smart00349
    Location:7 → 46
    KRAB; krueppel associated box
    COG5048
    Location:168 → 572
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:199 → 219
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:589 → 611
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:7 → 45
    KRAB; KRAB box
    pfam13465
    Location:520 → 544
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    132918306..132956306 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    132969080..133013678 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q86T29.1 GenPept UniProtKB/Swiss-Prot:Q86T29

Gene LinkOut

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