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ADAMTSL4-AS2 ADAMTSL4 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 100289061, updated on 23-Nov-2021

Summary

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Official Symbol
ADAMTSL4-AS2provided by HGNC
Official Full Name
ADAMTSL4 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:40895
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in placenta (RPKM 12.2), lung (RPKM 3.8) and 19 other tissues See more
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Genomic context

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See ADAMTSL4-AS2 in Genome Data Viewer
Location:
1q21.2
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (150548564..150556700, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene focally amplified long non-coding RNA in epithelial cancer Neighboring gene CRISPRi-validated cis-regulatory element chr1.8461 Neighboring gene Sharpr-MPRA regulatory region 6123 Neighboring gene ADAMTS like 4 Neighboring gene microRNA 4257 Neighboring gene ADAMTSL4 antisense RNA 1 Neighboring gene RNA, 7SL, cytoplasmic 473, pseudogene Neighboring gene RNA, 7SL, cytoplasmic 600, pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000001.11 Chromosome 1 Reference GRCh38.p13 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    150548564..150556700 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001738229.1 RNA Sequence

  2. XR_001738227.1 RNA Sequence

  3. XR_001738228.1 RNA Sequence

  4. XR_001738226.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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