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SLC38A4-AS1 SLC38A4 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100288798, updated on 13-May-2022

Summary

Official Symbol
SLC38A4-AS1provided by HGNC
Official Full Name
SLC38A4 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:56178
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in kidney (RPKM 2.8), thyroid (RPKM 1.7) and 25 other tissues See more
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Genomic context

See SLC38A4-AS1 in Genome Data Viewer
Location:
12q13.11
Exon count:
7
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (46383676..46652579)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (46343235..46612159)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (46777459..47046362)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene SLC38A2 antisense RNA 1 Neighboring gene solute carrier family 38 member 2 Neighboring gene uncharacterized LOC124902923 Neighboring gene Sharpr-MPRA regulatory region 10514 Neighboring gene olfactory receptor family 7 subfamily A member 19 pseudogene Neighboring gene microtubule affinity regulating kinase 3 pseudogene 1 Neighboring gene solute carrier family 38 member 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125377.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC008014, AC008035, AC025031
  2. NR_125378.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and contains an alternate internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC008014, AC025031, AC121337
  3. NR_125379.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an exon and contains an alternate internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC008014, AC025031, AC121337
  4. NR_125380.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate splice site at the 5' terminal exon, lacks an exon, and contains an alternate internal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC008014, AC025031, AC121337
  5. NR_125381.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' terminal exon and lacks an exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC008014, AC025031

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    46383676..46652579
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    46343235..46612159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)